RNA id: TU168839


Basic Information

Item Value
RNA id TU168839
length 501
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G142573
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3379721 ~ 3381739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATATCCTGAAGGTGCTGGTGAGTATAGTTTGAGTATAGTGACACTTTTATATCCTGAAGGTGCTGGTGAGTATAGTTTGAGTATAGTGACACTATTATATCCTGAAGGTGCTGGTGAGTATAGTTTGAGTATAGTGACACTATTATATCCTGAAGGTGCTGGTGAGTAGTTTGAGTATAGTGACACTTTTATATCCTGAAGGTGCTGGTGAGTATAGTTTGAGTATAATGAGACCTTTATATCCTGAAGGTGCTGGTGAGAACAGTGATGCTTTTATGCCTGGAATGCGTTGTGGAGTATAGTTCGAGTATAGCACTGCTTTTATACCTGGAAGGTGTTGGCGAGGATCTCAGCTCCACGCTGGTTGGTGTGTTTGGATAGGCCAACAAAGAACTCTCTCCCGGTGAACAGCACATCACTGCCCTCCAGTGTGGCTCCATCATCCTCCATCTCCACGATGGTCAGGTTCAGCTCAGTGAGAACACGCCTCACTGCCTCcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168808 lncRNA upstream 27602 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA upstream 58553 3312761 ~ 3321168 (+) True G142553
TU168782 lncRNA upstream 149421 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 163935 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 163944 3211363 ~ 3215777 (+) True LOC117598172
TU168855 lncRNA downstream 9166 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 12033 3393772 ~ 3396067 (+) False LOC113523845
TU168850 lncRNA downstream 15931 3397670 ~ 3400823 (+) True G142576
TU168842 lncRNA downstream 33783 3415522 ~ 3434049 (+) False G142575
TU168847 lncRNA downstream 33783 3415522 ~ 3435565 (+) False G142575
XM_026909905.2 mRNA upstream 11174 3362400 ~ 3368547 (+) True rps5
XM_034307426.1 mRNA upstream 23078 3346572 ~ 3356643 (+) True ppt2b
XM_026909884.2 mRNA upstream 71397 3293799 ~ 3308324 (+) True cratb
XM_034307287.1 mRNA upstream 225875 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 256007 3118288 ~ 3123714 (+) True rps18
XM_034307220.1 mRNA downstream 2441 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 6524 3388263 ~ 3396036 (+) False LOC113523845
XM_026909875.2 mRNA downstream 320757 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA downstream 320757 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA downstream 370228 3751967 ~ 3816623 (+) False khdrbs3
XR_003402471.1 other upstream 11383 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 13463 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 15373 3364215 ~ 3364348 (+) True LOC113523857
trnac-gca_12 other upstream 118776 3260874 ~ 3260945 (+) True trnac-gca_12
trnac-gca_11 other upstream 119309 3260341 ~ 3260412 (+) True trnac-gca_11
TU168853 other downstream 6514 3388253 ~ 3396067 (+) True LOC113523845
TU168849 other downstream 15931 3397670 ~ 3462171 (+) False G142576
TU169682 other downstream 1103104 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 1103144 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 2359219 5740958 ~ 5747944 (+) False gpx3

Expression Profile