RNA id: TU168842


Basic Information

Item Value
RNA id TU168842
length 1698
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G142575
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3415522 ~ 3435565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttagaaaaatatCTTGTGTACCTTTTGCAAAATTGATCATTAATTCTTCTGggaatcaaaattaaaaaaggacaaaacacaaaaggtatattaaattgaaaaaaataagggaaaaaacGTAAATGATTGACAATAACAGACATTCTCATCTTACTCAACATCTTGTAGTTTAACCCTTAATGAGAGATAATAAAGATTCAGTGTGTCAATAGTGACATCTTATCGATatatttctttacaaaaaaagtaaaaagaggtaaacCAAGAGAAAAATAATGGAAGGCTATGATTCATCTCCTCAAGACATAAAGTGAACAAGCAACACAATGATGTGATCGCATGaaagttttacattttgtagctggaattaaaataaaacagaggaaaaaaaaccccgaAACAGGATTAAATATCACAACTGATCGAAAAGGAAACGcgacatcctgtgtgtgtgtgtgtgtgtgtgtgagagagagagaattaataTGTACAGGAATTCACAAATGtgactgattgtgtgtgtggataagCACTGggtttatttatctgtgtgtgtgtgtgtgtgtgtgtgaattaataTGTACAGAAATTCACAAACGTGACTGATTGTGTGTGGATAAGCACAGggtttatttatctgtgtgtgtgtgtgtgtgtgtgtgtgagagacaccCCCTCACACCAGCACCTTGGTGAGGAGCAGTGAGGCGAGTGAGGCGATGGcgaaggtgagtgtgtgtgtgttagcgagCGGTGCGGCGGTGTTGCACAGGTCGGTGTCGCAGCAGGTTTTGGTCATTTGGTAGATGCTGGTGTTGGAGCCAGAGGGAAAAGAAACATCTGTCGTCTTATTGCATTCGGCTATGTCCAGACATCCGCTCATGCGCACCTTAATCACACCcgctgatagagagagagagagacagagagagagagaaaataattatcattatttaaaaactatttaaaaatcaataataattttttttattttaaataaaaaaatctaaatcacaAACATTATATGGCTTCTGTTAACGGTGTTATTCCAGATGTTATTAATGTTTAGCTTATGTTGCAGTTACAGCTGTTGCTGTTCTTGCTGCTTTTGTTAATGTGGTTATTACAGATGTTACTGtcattattgatttttattaatgtggtTATTACAGATGTTACTGtcattattgatttttattaatgtggtTATTACagatgttattgttattattgatttttattaatgtggtTATTACAgatgttactgttattattgatttttattaatgttgttattacAGATGTTACTGtcattattgatttttattaatgtggtTATTACAgatgttactgttattattgatttttattaatgtggtTATTACAgatgttactgttattattgatttttattaatgtggtTATTACAgatgttactgttattattgatttttattaatgtggtTATTACAGATGTTACTGTTCTTGCTGCTtttattaatgtcattattaGAGATGCTATTGTTATTACtgcttttgtcaattttattttattacattatttttatgttgtttttacaTTATCCTCATTACTAGTTTTGCTATCACTGTTGTTACAgctgttattaatgttgttaatcaagctgttgttgttattacagATGTTCTTTTAACAgttatttcagctttttttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168850 lncRNA upstream 14699 3397670 ~ 3400823 (+) True G142576
TU168854 lncRNA upstream 19455 3393772 ~ 3396067 (+) False LOC113523845
TU168855 lncRNA upstream 24375 3390905 ~ 3391147 (+) True G142580
TU168839 lncRNA upstream 33783 3379721 ~ 3381739 (+) True G142573
TU168808 lncRNA upstream 63403 3283128 ~ 3352119 (+) True G142545
TU169296 lncRNA downstream 183127 3617176 ~ 3620662 (+) True G142908
TU169297 lncRNA downstream 183127 3617176 ~ 3624288 (+) False G142908
TU169408 lncRNA downstream 492010 3926059 ~ 3933020 (+) True G142999
TU169457 lncRNA downstream 634309 4068358 ~ 4069576 (+) True G143048
TU169540 lncRNA downstream 692541 4126590 ~ 4126795 (+) True G143125
XM_034307220.1 mRNA upstream 19486 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA upstream 19486 3388263 ~ 3396036 (+) False LOC113523845
XM_026909905.2 mRNA upstream 46975 3362400 ~ 3368547 (+) True rps5
XM_034307426.1 mRNA upstream 58879 3346572 ~ 3356643 (+) True ppt2b
XM_026909884.2 mRNA upstream 107198 3293799 ~ 3308324 (+) True cratb
XM_026909875.2 mRNA downstream 268447 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA downstream 268447 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA downstream 317918 3751967 ~ 3816623 (+) False khdrbs3
XM_034307337.1 mRNA downstream 575870 4009919 ~ 4046648 (+) True LOC113523835
XM_034307648.1 mRNA downstream 1034073 4468122 ~ 4479494 (+) True rragcb
TU168853 other upstream 19455 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 47184 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 49264 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 51174 3364215 ~ 3364348 (+) True LOC113523857
trnac-gca_12 other upstream 154577 3260874 ~ 3260945 (+) True trnac-gca_12
TU169682 other downstream 1050794 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 1050834 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 2306909 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 3153162 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 3345940 6779989 ~ 6798904 (+) False G144353

Expression Profile