RNA id: XM_034307220.1


Basic Information

Item Value
RNA id XM_034307220.1
length 1434
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113523845
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3384180 ~ 3396067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgagtgtgtgtaagagagaaagagagagagagagcactgatCTGATCCAGCAGGATGAAGTTGTTTAGTGATGCAGGAATGAGAGCTGACCGGATGATAGATCTCCCTCTGCTCATGaaagCGGTGTGTCTCACCTGTTACGAGTGTGTGTTTCCAACCATCTCTCCACTCGAATGCCAGGGGTTTCCGAAGAAATGTGCTGCAGGTGAGCGCTGCCTGTACAGCACCGCCACAGCCGTAAAggACTCTGTGCGTTTTGTGCTGAAGGAGAAGAGCTGTGCCGCAGCGTCCAAGTGTGGTATTAGAGGAGAGAAACGCACCGCAGGACTCGTCTTCAGCTACAACACACAATGCTGCGACACTGACCTGTGTAACGCTGCGGCCCCGCCCGGCGCCCCCTGCTGGAGCCGAACGGCACTGAGCCTCGGCGGCACGGCGCTCGCTGTCCTGCTGGCCTCAGtgtgaaaccacacacacccacacccacacccacacacttctCTGTTTACCTAATCATATCTGCTACAACATCACAGACACTTTACCCAATAATCTCTGAATGGTTCACTCATCACTTCTgatgtgtgacacacacacacacacacacacacacacacagagcagtccAGGCTATTTGCATACTACTCATTGAATGGTTCACTTGTAAAATTCTCATCTGTTGCACCtaaagtgacacacacacacacacacacacacacacacacactgatctatAGCTGAAATGAGTCATAGttattttctcactcaccacacacacacacacacacacacacactacacatatatatatatatatatctcgaCACTAAACCTGAGAGCACagctgcatttttctctctctctctctctctctctcacacacagctttaacagtACAAACCTTCTGTAACTAACAGGAACTTTCTAGAACATGATGACACCTATTCTGATTCTAGAATAATGACTGGTGATAGTGTATTACCCCTAGCATGCTCTAATTCTGgaactaataaacaaataaatacctgGTTCCAATTCCAGAACATTAAAGTACAATCATGTCCTAGACTCCTAACATGTTCTGATTCTGGAACTCTAAAGGTCAGCGAACTGTAAGTGAGAGTACATGAGCTGTGACGTAATGTTGATGTAAGGTGTAAACTGTGGAAAGGTGACTAGCAGGTTGATGTTAAACGtaatttcagtgtaatttaattcataaaGAGTCTTTtctagtaatttaccaacacatctgagtgAAATGTCAACGTTCTGGATGGTTCTGCCTCGTTTCCATGGTCACAGTGATTTTAcaatgtgtgtataaaaagaCTCAATAGCtacatgttagctagctaagttgtTTGCTTTGGTAATACTTGTTCTGAttcaagaaaatattaaaattattctgTCAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168839 lncRNA upstream 2441 3379721 ~ 3381739 (+) True G142573
TU168808 lncRNA upstream 32061 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA upstream 63012 3312761 ~ 3321168 (+) True G142553
TU168782 lncRNA upstream 153880 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 168394 3204461 ~ 3215786 (+) False LOC117598172
TU168850 lncRNA downstream 1634 3397670 ~ 3400823 (+) True G142576
TU168842 lncRNA downstream 19486 3415522 ~ 3434049 (+) False G142575
TU168847 lncRNA downstream 19486 3415522 ~ 3435565 (+) False G142575
TU168864 lncRNA downstream 23516 3419552 ~ 3421435 (+) True G142584
TU168845 lncRNA downstream 35087 3431123 ~ 3435565 (+) True G142575
XM_026909905.2 mRNA upstream 15633 3362400 ~ 3368547 (+) True rps5
XM_034307426.1 mRNA upstream 27537 3346572 ~ 3356643 (+) True ppt2b
XM_026909884.2 mRNA upstream 75856 3293799 ~ 3308324 (+) True cratb
XM_034307287.1 mRNA upstream 230334 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 260466 3118288 ~ 3123714 (+) True rps18
XM_026909875.2 mRNA downstream 306460 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA downstream 306460 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA downstream 355931 3751967 ~ 3816623 (+) False khdrbs3
XM_034307337.1 mRNA downstream 613883 4009919 ~ 4046648 (+) True LOC113523835
XM_034307648.1 mRNA downstream 1072086 4468122 ~ 4479494 (+) True rragcb
XR_003402471.1 other upstream 15842 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 17922 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 19832 3364215 ~ 3364348 (+) True LOC113523857
trnac-gca_12 other upstream 123235 3260874 ~ 3260945 (+) True trnac-gca_12
trnac-gca_11 other upstream 123768 3260341 ~ 3260412 (+) True trnac-gca_11
TU168849 other downstream 1634 3397670 ~ 3462171 (+) False G142576
TU169682 other downstream 1088807 4484843 ~ 4505055 (+) False fhl3b
TU169683 other downstream 1088847 4484883 ~ 4505055 (+) False fhl3b
TU170101 other downstream 2344922 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 3191175 6587211 ~ 6593605 (+) True LOC113547098

Expression Profile