Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU169297 |
| length | 295 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 2 |
| gene id | G142908 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 3617176 ~ 3624288 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU168847 | lncRNA | upstream | 181611 | 3415522 ~ 3435565 (+) | False | G142575 |
| TU168845 | lncRNA | upstream | 181611 | 3431123 ~ 3435565 (+) | True | G142575 |
| TU168842 | lncRNA | upstream | 183127 | 3415522 ~ 3434049 (+) | False | G142575 |
| TU168864 | lncRNA | upstream | 195741 | 3419552 ~ 3421435 (+) | True | G142584 |
| TU168850 | lncRNA | upstream | 216353 | 3397670 ~ 3400823 (+) | True | G142576 |
| TU169408 | lncRNA | downstream | 301771 | 3926059 ~ 3933020 (+) | True | G142999 |
| TU169457 | lncRNA | downstream | 444070 | 4068358 ~ 4069576 (+) | True | G143048 |
| TU169540 | lncRNA | downstream | 502302 | 4126590 ~ 4126795 (+) | True | G143125 |
| TU169600 | lncRNA | downstream | 630144 | 4254432 ~ 4254668 (+) | True | G143185 |
| TU169601 | lncRNA | downstream | 630436 | 4254724 ~ 4254951 (+) | True | G143186 |
| XM_034307220.1 | mRNA | upstream | 221140 | 3384180 ~ 3396036 (+) | False | LOC113523845 |
| XM_026909906.2 | mRNA | upstream | 221140 | 3388263 ~ 3396036 (+) | False | LOC113523845 |
| XM_026909905.2 | mRNA | upstream | 248629 | 3362400 ~ 3368547 (+) | True | rps5 |
| XM_034307426.1 | mRNA | upstream | 260533 | 3346572 ~ 3356643 (+) | True | ppt2b |
| XM_026909884.2 | mRNA | upstream | 308852 | 3293799 ~ 3308324 (+) | True | cratb |
| XM_026909875.2 | mRNA | downstream | 78208 | 3702496 ~ 3816623 (+) | True | khdrbs3 |
| XM_026909876.2 | mRNA | downstream | 78208 | 3702496 ~ 3816623 (+) | False | khdrbs3 |
| XM_026909877.2 | mRNA | downstream | 127679 | 3751967 ~ 3816623 (+) | False | khdrbs3 |
| XM_034307337.1 | mRNA | downstream | 385631 | 4009919 ~ 4046648 (+) | True | LOC113523835 |
| XM_034307648.1 | mRNA | downstream | 843834 | 4468122 ~ 4479494 (+) | True | rragcb |
| TU168849 | other | upstream | 155005 | 3397670 ~ 3462171 (+) | False | G142576 |
| TU168853 | other | upstream | 221109 | 3388253 ~ 3396067 (+) | True | LOC113523845 |
| XR_003402471.1 | other | upstream | 248838 | 3368205 ~ 3368338 (+) | True | LOC113523858 |
| XR_003402472.2 | other | upstream | 250918 | 3366125 ~ 3366258 (+) | True | LOC113523859 |
| XR_003402470.1 | other | upstream | 252828 | 3364215 ~ 3364348 (+) | True | LOC113523857 |
| TU169682 | other | downstream | 860555 | 4484843 ~ 4505055 (+) | False | fhl3b |
| TU169683 | other | downstream | 860595 | 4484883 ~ 4505055 (+) | False | fhl3b |
| TU170101 | other | downstream | 2116670 | 5740958 ~ 5747944 (+) | False | gpx3 |
| TU170815 | other | downstream | 2962923 | 6587211 ~ 6593605 (+) | True | LOC113547098 |
| TU170969 | other | downstream | 3155701 | 6779989 ~ 6798904 (+) | False | G144353 |
