Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU169601 |
| length | 228 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G143186 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 4254724 ~ 4254951 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU169600 | lncRNA | upstream | 56 | 4254432 ~ 4254668 (+) | True | G143185 |
| TU169540 | lncRNA | upstream | 127929 | 4126590 ~ 4126795 (+) | True | G143125 |
| TU169457 | lncRNA | upstream | 185148 | 4068358 ~ 4069576 (+) | True | G143048 |
| TU169408 | lncRNA | upstream | 321704 | 3926059 ~ 3933020 (+) | True | G142999 |
| TU169297 | lncRNA | upstream | 630436 | 3617176 ~ 3624288 (+) | False | G142908 |
| TU169735 | lncRNA | downstream | 236146 | 4491097 ~ 4543484 (+) | True | G143312 |
| TU169681 | lncRNA | downstream | 250169 | 4505120 ~ 4509248 (+) | False | fhl3b |
| TU169739 | lncRNA | downstream | 266923 | 4521874 ~ 4522693 (+) | True | G143315 |
| TU169740 | lncRNA | downstream | 268311 | 4523262 ~ 4571638 (+) | True | G143316 |
| TU169741 | lncRNA | downstream | 269047 | 4523998 ~ 4559387 (+) | True | G143317 |
| XM_034307337.1 | mRNA | upstream | 208076 | 4009919 ~ 4046648 (+) | True | LOC113523835 |
| XM_026909875.2 | mRNA | upstream | 438101 | 3702496 ~ 3816623 (+) | True | khdrbs3 |
| XM_026909876.2 | mRNA | upstream | 438101 | 3702496 ~ 3816623 (+) | False | khdrbs3 |
| XM_026909877.2 | mRNA | upstream | 438101 | 3751967 ~ 3816623 (+) | False | khdrbs3 |
| XM_026909906.2 | mRNA | upstream | 858688 | 3388263 ~ 3396036 (+) | False | LOC113523845 |
| XM_034307648.1 | mRNA | downstream | 213171 | 4468122 ~ 4479494 (+) | True | rragcb |
| XM_026947326.2 | mRNA | downstream | 229882 | 4484833 ~ 4508842 (+) | True | fhl3b |
| XM_026947325.2 | mRNA | downstream | 270664 | 4525615 ~ 4530986 (+) | False | stpg1 |
| XM_034307695.1 | mRNA | downstream | 271018 | 4525969 ~ 4530986 (+) | True | stpg1 |
| XM_026947314.2 | mRNA | downstream | 282545 | 4537496 ~ 4593588 (+) | True | map7d1b |
| TU168849 | other | upstream | 792553 | 3397670 ~ 3462171 (+) | False | G142576 |
| TU168853 | other | upstream | 858657 | 3388253 ~ 3396067 (+) | True | LOC113523845 |
| XR_003402471.1 | other | upstream | 886386 | 3368205 ~ 3368338 (+) | True | LOC113523858 |
| XR_003402472.2 | other | upstream | 888466 | 3366125 ~ 3366258 (+) | True | LOC113523859 |
| XR_003402470.1 | other | upstream | 890376 | 3364215 ~ 3364348 (+) | True | LOC113523857 |
| TU169682 | other | downstream | 229892 | 4484843 ~ 4505055 (+) | False | fhl3b |
| TU169683 | other | downstream | 229932 | 4484883 ~ 4505055 (+) | False | fhl3b |
| TU170101 | other | downstream | 1486007 | 5740958 ~ 5747944 (+) | False | gpx3 |
| TU170815 | other | downstream | 2332260 | 6587211 ~ 6593605 (+) | True | LOC113547098 |
| TU170969 | other | downstream | 2525038 | 6779989 ~ 6798904 (+) | False | G144353 |
