RNA id: XM_026947326.2


Basic Information

Item Value
RNA id XM_026947326.2
length 4725
RNA type mRNA
GC content 0.39
exon number 6
gene id fhl3b
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4484833 ~ 4509248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGGACCACTTTTCAGCGCGCGGAGGTTTAGACCTCACAGAGCCGTGCGCGCGCCCGAGAGAGAGCTGAGTCCTGAGGAGAGAGgttgTGAGTGAGCGTGGATCAGGATGAGTGACCAGTTTAGCTGTGAGAACTGTAAGGAGTCTCTATACGGGAGGAAGTACATCCAGGTGGACGACGTCCCTCACTGCGTCCCCTGCTATGATCGTCTTTACGCCAACATCTGCCAGGGCTGCAAAGAGCTCATCGGACACAACTCGCgggagTTGTACTACGATGACCACCACTACCACGAGGAGTGTTTCCGCTGCTCCCGCTGCAGTCGCTCGCTTGCAGATGAACCTTTCACCTGCCAGGATGAAGCGCTTCTGTGTAACGACTGCTACTGCAGTGAGTTCTCCTCCAAATGTGTGGCCTGCAACAAGACCTTCATGCCAGGATCGAGGAAGTTGGAGTACAGTGGCTCTACCTGGCATGAGGAGTGTTTTGTATGTTGTGCGTGTCAACAGTCTCTGGGCTCGCAGTCTTTCATCCCCGATAAGGATCAGTATTACTGCGTGCCCTGCTACGAGAGACGCTTCGCCCCCCGCTGTAGCCACTGCAaacagatcctGCTGCAAGGTGGGGTGACGTACCGGGACGAGCCGTGGCACAGGGAGTGTTTCCTGTGCTCGGGCTGTAAGATGCAGCTGGCTGGTCAGCCCTTCACCTCTCAGGGGGACAAACCTTACTGCGTCAAGTGCTTCAGCTGCCTGTACGCACAGAAATGCACCGCCTGCAACAAGGCCATCacaggtttcGGTGATGGAAAGTATGTTTCCTTCGAGGAACGTCAGTGGCATCAGTCGTGCTTTAAGTGCTCCGGatgctctgtctctctggtcGGAGCCGGATTTTTCCCCAACGGCTCAAAGATCCTGTGCAAAGACTGCAACAACTGAGACActtctctctgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaacactgatCAGGTGTTGGAGATACAGCCAGATGAATGCTGacgttcttctttttttttattcagctttgcttttaaaaaaatgttttgagtcatataatacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatttgtttattatttcaaagCAGTGTTTGTGTAGAATAAATAATTCACGCTATAGTAATCATTCACAGTGAGATCACACGTTTTTTACTGTTAAAGGAGCAAAATTATATTCTATGTAACACCAGTGATTTATTTTGCGAATATTAAATTTTGTTTACAGTTCCTACGATCCAGTTTTGGCAGCAGTTTCTTCTTAAAAAACATTCTCCAGTATAAATCTGATTAGGGGGCGTGGCTACGCATGACTTTAGTTAGCGATGTCACAAAATAAGCTAGACGAATCACGGGTGATATGCAAATTACCAAAGAATAATGAGATTGTGAGAAACTTTTAACCAGTAGAACCAGTgtgctggctagctaacttagctaatatTATACTTTTTTGATAAGCAAAACcatggttgttatggtaacagAATATTTGAATGCTTTTGGCTGCTATTGAATAAATCACTGAGGATACGATGATGTAAATCTGACTAATAGTTACAAAGAGTTAGCTGGTTAGCTGTTTCAAAGTTGTATTTTCGCAAATCCGAGCATATTTAAACAAGTTTAAATGagtgtttttggggtttttttgtatataaaccTAGATTAAATGTAGGGCAGTTAAAGTATAGTTTCCAAACTGTAACAGTTTATGAGCtgtaaacacacgcacacacacacacatagcaccGTTAGCGTACACTTCTTAGTTTGCTAACAAAACAGTAACAATGTGTTGACATGGAGCTCAAGAAGTCATATTTTTGTCATGGAAAGACAAATGGTGGTTAAATttgtgagaacactgttgctaggcaactaggAAACAAGGATGCCAAGCAAAATAGCTAATGACTGAGGTAAACGATTTAGCCAGCTAGCACACAGCTGTTAGTCACACAGTAAATTCATAGTAACAGTAGAAGTGACACCAAATCATCAGCAAtgtcaacatttccctcagaggtgttgattaattactAAGTAAATACTCCTGATAGCTAAAATTATCCTATAATTATACTTAGCATTGACGGCTAAACCAGCTTCCATCTTTGCCTCTATGAGAAACGTAAACAATTAGCTGATGGAAGAtgatgatttacaaataaatacgATCTACCTTCGACAGACCTCGTGTAAAAATGAACTTAAAAGTAGTTTTATTAAAGGCCTCAAAGTATTTAAGGAAGAAGACGACCTCTCCCCCACCTTTCAGTTATCTTCTAGCATTTTCTTTGTGTGAAGCTGCCATGTAGTATATCAGCACAGCAGAATGTTAAATGGATTTCAGATTTCCTATCATATTCCACATCTAATGATTTTACCTGAGCAAACATACACATCAAATACCATTTAAACCTGACTTACTGAACCTGCTTTGAGCAGTCTTGCTGAGCGTGACGAACCACATTCCAACAGGCAGTTAACATTTCAGTCACATACGAGTGCAATCTTCATGCTCTCTTGTCGAGTTGTGTGTATTTCAGCCTGTAAATTAGCCTTAAGTGTTTTGAATGTGTCACTGATGTAGATTACTGAAGACATTCTCACAATACTCACATGTAGACGTCGTTATTATCTAAACCTACATTCACGTTACAAGCCTTACTGCTCAAATCCATTTTATTCCACCATAAaggtttatatttgtgtttgtaagtGACCTGTAGGTCACGTGTGTCTCCTGAGGACCCCAAGTTCTAGTGTTGCTAGCTTATTAATATATTGctacttcttttttaaaaacactgtctTGCTGAGTGATAACAGCTAGCAGactaaaattaattataaaatgttttcataaaacTCTTTACAAAAGTATATTAGCATAGCAAGTATATATGCTTGCTAAaaaataagctagctagcattatgaCACACTTAACAATGTTAGaacagctagcttgctagcaaaggCATTAGAAATAAggaatgaaatgcagttagttGGCTAGCATTACACAAAGGCATTGTCACTGGAGTGGCTAAAGATGAACAGCTCTTAGTGATGTTAAAAAGTAGGATGTTACGTGTATTTAGCTACCTAATTGTGAAGCTAGTGAGCTGTTTTTGACTCCAGATAGCTAAAATTACAACATATTTAGCTAGTTATCTATGACAGTAATGTATATCTactgcaaacaaaaaaaccctgtgtaggataagcggtacgaaagatggaaggatggatagatGTTTACCAAAATAAGCCGGCTTGCATTAGCCTACTAATAAATCAGCTAGCTAGCCATTAAAGTATCTTAGCTAAACATAAAGAGCTAGCGAGCTAGTAGTGCTGTTAGAAATAAGGTATGAAATGTAGTTAGTTGGATAGCATTACAACAGTAGTTAACTGAGAAGCTAGCTAGTTGTTTGTCATGTGACTGAAGTCAaccatttagctagctagcatgtagctGTTAAGCGTTCCATGGAGACAATGTAAGAatgcaaatgagacaaaatagtcaggaatatcaacatttctctcTGACGAATTCCTGAGAAAAGACTCCAGATTGCTAAAATTACTCCGTAATTAGTTAAATATCTGATTTGGTAATGTATAgctactgtaaaaaataaataaataaatatgtaaaattgtaaaactgGCTTATTTAGGACATTATATAATAGTAGCTAGCTGACTGAAATTTCTTGAAAAATTCATTGTAAAATGGACAAATACTAGCCAGCTATTTATAATTAGCTATCATGCCCCAGTTACAGCTCTTCTAGCCAACACGTATTTAATAGAATTCATAATAGAAACACAAGATATCTATctttaatcaacactttctcatattttattgatttaaaatatattttttaattcatgctAATCTGGACCACGAGCATTTGGAGCACTTGAGGCACGTAACGTGAAAGTAGGCTTCATATTTGCACATCTGTAAAAATGTATTCTGCATTTATTTCACAAGAAGTTCCAGTCATCCGTCAGTTCtgttgttaaatgtttaaagtttgCGATATCTGCATGGACGGGTAACACGTTTATCCTCATATTCGAATAATGTTGCACTTTCATTACGATGCCAGTTCAGCGTGTAAACATTGCGGTTCGAAGCGTGTATAATACAGCGGGAGGGAATAACGCGTCTCCGGGATCACAGTAACAACACGAGAACAGGAGCTGTTAATACACAACAAAGTAAAAGTGAAGAATTTATtctattatacagtatataacatcaaattaaaaaaaataaaataaataaatacaacgtGTGCGCTTGTGTGTGGAAGGATAACTGCAttatatgactttttttattcctgatttaaattttttgaaATGCTTTACTCGTGGTTGTGAGTTTCAGTGCTTTAATGCGAGaattaaaatccatttattttaaataaaatataaattagacATAAAATATAGTACagacatataaaaatgtaaatataatcgAAACGCTGTCAGAAAGTGAAACTGCATGCAAAGAAATGGCTTTATGTTGTGTCGTATTGTATTGTGTTAtattgtgttgttgtgtattgtattctatttttttgtattgtgttgtagtatattgtgttgtattgtattgcattgttttg

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169601 lncRNA upstream 229882 4254724 ~ 4254951 (+) True G143186
TU169600 lncRNA upstream 230165 4254432 ~ 4254668 (+) True G143185
TU169540 lncRNA upstream 358038 4126590 ~ 4126795 (+) True G143125
TU169457 lncRNA upstream 415257 4068358 ~ 4069576 (+) True G143048
TU169408 lncRNA upstream 551813 3926059 ~ 3933020 (+) True G142999
TU169739 lncRNA downstream 13032 4521874 ~ 4522693 (+) True G143315
TU169740 lncRNA downstream 14420 4523262 ~ 4571638 (+) True G143316
TU169741 lncRNA downstream 15156 4523998 ~ 4559387 (+) True G143317
TU169754 lncRNA downstream 48464 4557306 ~ 4557715 (+) False G143322
TU169755 lncRNA downstream 48464 4557306 ~ 4558418 (+) True G143322
XM_034307648.1 mRNA upstream 5339 4468122 ~ 4479494 (+) True rragcb
XM_034307337.1 mRNA upstream 438185 4009919 ~ 4046648 (+) True LOC113523835
XM_026909875.2 mRNA upstream 668210 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA upstream 668210 3702496 ~ 3816623 (+) False khdrbs3
XM_026909877.2 mRNA upstream 668210 3751967 ~ 3816623 (+) False khdrbs3
XM_026947325.2 mRNA downstream 16773 4525615 ~ 4530986 (+) False stpg1
XM_034307695.1 mRNA downstream 17127 4525969 ~ 4530986 (+) True stpg1
XM_026947314.2 mRNA downstream 28654 4537496 ~ 4593588 (+) True map7d1b
XM_026947315.2 mRNA downstream 28654 4537496 ~ 4593588 (+) False map7d1b
XM_026947317.2 mRNA downstream 28654 4537496 ~ 4593588 (+) False map7d1b
TU168849 other upstream 1022662 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 1088766 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 1116495 3368205 ~ 3368338 (+) True LOC113523858
XR_003402472.2 other upstream 1118575 3366125 ~ 3366258 (+) True LOC113523859
XR_003402470.1 other upstream 1120485 3364215 ~ 3364348 (+) True LOC113523857
TU170101 other downstream 1232116 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 2078369 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 2271147 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 2274674 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 2287967 6796809 ~ 6870576 (+) True G144353

Expression Profile