RNA id: TU170016


Basic Information

Item Value
RNA id TU170016
length 1085
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G143559
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5425417 ~ 5426525 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAAATTTTGAAGACACTTTTGAAATTTTGGAGACTTTGGGGACAACCTGTTTAAATGACATTAGCTAAATGTTTTGAACTAATCAATAATGATAAAAGTGCTGGCATTAAGAGGTCACCTGGGAATTCAGACTGCAATGCAAATTCTTTACGCTGTGTTTGATTTTCCTCCCTCACCATGAAACCGATtgtcatttgtatttaaaataggggagggaaaaaaaacacactgatcaaCATGAGGCAATCGGGGAACTACATTACACCATGGGGTATGTTTATTACACCACGCATCATGTAGCTCGAGTATTAATTGCCTCTTTGTTTACAAGATAGAAATTAGTCTCACTTCCCTTTAAGCATCATTTCCCCACAGAGTGTAAGAGCTTGAAGCTGCGGCGCTGCGAGACGCGACGAGGATGAAACGGTTCTTCGGGTCTCTCTACTCACAGCAAGGCTCAAAGCTGGGCCCGAGCTTTCATTAATCCTCCAGGGCTAGTCATCCCTTAGGCCCaatgatcaaaataaataaataaataaataaataaaagagtggTCGATGCCGAAGACATCACTGTGGTGCGAAATAAATATAGCACTAAGTTGATGTCGCTGTTGATTTCAGTCCGGCTGTGAAATCATCCATGAGGACAAACTGGCTGGAAAAATGTTGGACAGAACTAATTATTCGCAGCATGTGAGGAAATTCAGGCACACCACCCACTCTCTTCCGAGGCAGAAGAACAATGTGTAAACACGAGCCGAGTCACGCAGCCGGGAGTTGTTGTTTTATCCTTATccttattactattattattatgctttcATGGCAGCAGTTTACATCGCATCCTAATGCAATATTAAACAGTAATGCCTATTTGTACAGTGTTCTCAAATTTTAATATTAGCACCTCCAAAGTATACGACGAAGGCATTAATCACGTTCTTTAATGGTGAAAGGATCTACGAATATATATGAATGGATATGAGCTCGGGTATTAGCTCAGCTCTATCACGAAAATGAAGAAGCAATTTCTAAACATTTCATAAACACAGACCaccgtgcgtgcgtgtgtgtgcgcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169989 lncRNA upstream 48300 5362261 ~ 5377117 (+) True G143532
TU169986 lncRNA upstream 49673 5358639 ~ 5375744 (+) True G143529
XR_004578816.1 lncRNA upstream 230468 5192067 ~ 5194949 (+) True LOC117598093
XR_004578817.1 lncRNA upstream 230468 5192067 ~ 5194949 (+) False LOC117598093
TU169966 lncRNA upstream 232130 5192061 ~ 5193287 (+) False LOC117598093
TU170028 lncRNA downstream 26634 5453159 ~ 5454085 (+) True G143566
TU170031 lncRNA downstream 56093 5482618 ~ 5487228 (+) True G143569
TU170039 lncRNA downstream 64769 5491294 ~ 5491838 (+) True G143577
TU170069 lncRNA downstream 173838 5600363 ~ 5604660 (+) True G143601
XR_004578802.1 lncRNA downstream 184037 5610562 ~ 5613308 (+) True LOC117598079
XM_026947374.2 mRNA upstream 5257 5414917 ~ 5420160 (+) True LOC113547138
XM_034307199.1 mRNA upstream 519554 4902900 ~ 4905863 (+) True LOC117597937
XM_026947390.2 mRNA upstream 734804 4671050 ~ 4690613 (+) True si:dkey-206d17.12
XM_026947358.2 mRNA upstream 793991 4606321 ~ 4631426 (+) True thrap3b
XM_026947321.2 mRNA upstream 831829 4560320 ~ 4593588 (+) False map7d1b
XM_034307132.1 mRNA downstream 138796 5565321 ~ 5582749 (+) False LOC113547141
XM_034307131.1 mRNA downstream 138891 5565416 ~ 5582749 (+) True LOC113547141
XM_026947312.2 mRNA downstream 314382 5740907 ~ 5747940 (+) True gpx3
XM_026947344.2 mRNA downstream 412101 5838626 ~ 5850058 (+) True LOC113547120
XM_034307400.1 mRNA downstream 427705 5854230 ~ 5861207 (+) True LOC113547110
TU169682 other upstream 920362 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 920362 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 1963246 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2029350 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 2057079 3368205 ~ 3368338 (+) True LOC113523858
TU170101 other downstream 314433 5740958 ~ 5747944 (+) False gpx3
TU170815 other downstream 1160686 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 1353464 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 1356991 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 1370284 6796809 ~ 6870576 (+) True G144353

Expression Profile