RNA id: XM_026947312.2


Basic Information

Item Value
RNA id XM_026947312.2
length 1369
RNA type mRNA
GC content 0.45
exon number 5
gene id gpx3
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5740907 ~ 5747944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATCTATCCAGctgatttacacacagacagaggtgtggagaaagagagactgagagactgtgagagaaagagagagagagagagaaagagacagagtggaATAACCGAGTTTCTCCTGATGGAGACCCAGAAAAAAATCTGGGTCTCTGTTCTGCTCCTGGTGGCTGTTTTTCAGCCGACTGTCACTGCAGGATGCAACACTCAGTTATGTAACCAGGCTGTGGATGGCTCCCTATTCGATTATGGAGCGAAGACCTTGACTGGAGATTTGCCCATTTCCTTCCGTCAGTATACTGGGAAGTACGTCCTCATTGTCAATGTGGCCACCTTCTGAGGACTTACCTTCCAGTATTTGGAACTGAATGCACTACAGGAGGAGCTAAAAGATCTGGGCCTCGTCATTCTCGGATTTCCTTGTAACCAGTTTGGGAAACAGGAACCCGGGTATAATCATGAGATCTTGCCCATGCTAAAGCATATCCGTCCAGGGAAAGGATTTGTTCCAAACTTCCAGCTCTTTGAAACTGGTGATGTGAACGGGCATAACGAGCAAAGTGTTTTCACTTTCCTGAAGAATGCCTGCCCACCTGTCGGTGACAGTTTTGGAAACCCCTCCGGCAGGCTGTTTTGGGAGCCGCTGAAAGTAACTGACATCAAGTGGAACTTCGAGAAGTTTCTGGTGGGCCCTGATGGAAAGCCCCTGATGAGGTGGTTTCCAAGGGTGAACGTTTCTGAAGTTCGGGCCGACATCATAAAACTCATCAATGAGCGGAATTCCAAAAACTAATCAACCAAAATTAAGGCACCTCAGATAACACTATTCTATATTTGTATCTTTCCAGGTGGTTAGAGGATGTTCTGTTATGCCAAAAATGCGAgagaaacaattttaaaattagaGAATCAAACTTAAGGTCAGTGTTCTTCAATTTCGCTCCTTCAGGACCAAGGAACTGAGCTATTTCCACTAGAAAATACCTGATTCACCAAAAAGAAACTCATGAGCTGATTCAGGTCTCTTGAGATTAGGAAACCATTCAGTTGTGCAGAATTGTGGCCTTTCAGACACTCTTCATGTAGAAGacagctttagatttaaaaaaaaaaaaaaaaaaaaaagtgattcctTGAGTGAGGCAGGTAGGAGCATGGCACCATGGTGGTTCTGGAGATCTGgacatgttcatgaagctcAGGTTTAAAAGCAGGACTTTCTGCAAAGCCTGAGTGGAGACTGAGGGATAAGAGCAGCTCTTCAGTGCATTCAGGCTGCTTGGTTCTACTCAGACATGTCTGGTTCTCCAGAGTGACCCATCAAACCCTGCTCCCACCTGCAACAGGATCCTGTCAATAAAGCATTAAAGAAAA

Function

GO:

id name namespace
GO:0004601 peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170118 lncRNA upstream 13320 5724880 ~ 5727587 (+) True G143644
TU170093 lncRNA upstream 88021 5649094 ~ 5652886 (+) True G143622
XR_004578802.1 lncRNA upstream 127599 5610562 ~ 5613308 (+) True LOC117598079
TU170069 lncRNA upstream 136247 5600363 ~ 5604660 (+) True G143601
TU170039 lncRNA upstream 249069 5491294 ~ 5491838 (+) True G143577
TU170248 lncRNA downstream 163043 5910983 ~ 5912741 (+) True G143757
TU170250 lncRNA downstream 163117 5911057 ~ 5912741 (+) False G143757
TU170260 lncRNA downstream 174871 5922811 ~ 5923752 (+) True G143766
TU170268 lncRNA downstream 184641 5932581 ~ 5936329 (+) True G143772
TU170347 lncRNA downstream 230162 5978102 ~ 5984378 (+) True G143832
XM_034307132.1 mRNA upstream 158158 5565321 ~ 5582749 (+) False LOC113547141
XM_034307131.1 mRNA upstream 158158 5565416 ~ 5582749 (+) True LOC113547141
XM_026947374.2 mRNA upstream 320747 5414917 ~ 5420160 (+) True LOC113547138
XM_034307199.1 mRNA upstream 835044 4902900 ~ 4905863 (+) True LOC117597937
XM_026947390.2 mRNA upstream 1050294 4671050 ~ 4690613 (+) True si:dkey-206d17.12
XM_026947344.2 mRNA downstream 90686 5838626 ~ 5850058 (+) True LOC113547120
XM_034307400.1 mRNA downstream 106290 5854230 ~ 5861207 (+) True LOC113547110
XM_026947346.2 mRNA downstream 117517 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA downstream 133906 5881846 ~ 5903463 (+) True n4bp3
XM_026947347.2 mRNA downstream 219802 5967742 ~ 5975213 (+) True ppp2caa
TU169682 other upstream 1235852 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1235852 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2278736 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2344840 3388253 ~ 3396067 (+) True LOC113523845
XR_003402471.1 other upstream 2372569 3368205 ~ 3368338 (+) True LOC113523858
TU170815 other downstream 839271 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 1032049 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 1035576 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 1048869 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 1049032 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile