RNA id: TU170250


Basic Information

Item Value
RNA id TU170250
length 1685
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G143757
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5910983 ~ 5912741 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAAATGCAGATTTGTTATATATTGCTAAACCAAAATGAAGCTCGAAGGCTGTGACTCCCTGATGCCTTGGTGATGCGTCTCAAACCAGAATTAGAGTGTATTTTCTTCGTAAAGGGTTGAGAGACACCCGTCTGTTTTGCGGAGATACGAGTGGTTTAAGCAGATCTTAAATGCTCCTCagtggaagaaaaagaaattgtgaTGAGCGTGATAACGGAACCACTGGCTAGGTTTAGTTTAACGTTGGGGTTAAGATTAGCTATGATCAGATTAGCACACTGAGCTGCTGCTTTATCAGATACACACCAACTGCTGAGGTCATGTTGTAGGTGTAacagttactgactgtagcaCGTGGAGTAATCTGGGGGTTGAGCAAATTCATTTCAGGTAACAACAGGGCAGAGTTTTGATAGTTAGTCCAAAGTATCTACTACATAGCTTCACATTGTACATTATATACAAATTTTCCATATATAGATTTTCACCAATGTTGCTGTGAAAGCCCTAAATCAGTTCTTTGGGAAAATGACATTGTTACAGTGTCAAATTTTTAGCTTGTGAATACAGTTACATAATTAGCACATTTTTGccagtagctgagtttattgctctagtctgccccctagtggagtAACCGAGACTAGCTCCTATTCCAGACGATTGTAGTTACAGAGTGGTTTCTAAATTGATTTGGTGAGCCGGATTAGAAGCTTTAGTACCCGCGGGCCGTATATTTGACATCTGCTGTGTACAGTGTATGTGCTGTGGTCAGAAAAGATATATCGTATAAAACACACTGTTCGTGGCCTAATACGAGATTTACTCTCTAACTGTACACCTACAACATGAACAACACGGTGGGAGTGTGTAATAAATCGACAGCTGTCCTAACACAcatttatagtgtattatagagTATTAGAGATGCATTAAATGGTATAAAACACAGGGTTTGTATTGATGGGTTTTGTGTATTACACTGAAGTGTGGATATTTTCACAAGAACATTTTGAAGACACTGGTTAAGCATGCTCCTGAGCAGTTTCTCCatctagaacacacacacacacacacacacctgattcagctcatgAACGGTTTTGGGAAACAAATGCTTCATTTAATCCAGCAGggtaaaacactgaaacactgtgaGCTAACTCTCTGCACTCAGTGTGCAGCTCCGTGGCTGATCTCTGCTCCAGGAATCACAAACCTGATCTCACACAGCCATAATGACGACTGTCTGCTTCTGAATCTGATTGTCTACtgaagcaaaataaacaaaaggaaatatttgTAGCACACATGTGGGAGATGACCAGGTTTGTTTGCCTCACGTGTTAGGATATCTAAtgctaaacattttttaaatccctaAATTCAACCATCAGGTCAAGCTATGCTGGTTCTTAACAGTttgaaatgtacacaatttccCTCAGATGTTGTCGATCAAACAAAACATGTCTGGTGTTTGATGTACTAGGCTTGAGTAGACTGAGGATGCTATCAGAAAACACGGAGTGAGTCCGTCTCTCTTGATGGAGATCAAACTGGAAGATCTGTTTATCTAGAAAACATCTACAGTGTTTCACACAGGAGCCAACAAATCTCTCTCTACGTTTTGTATGGAAAAATCAGGAGAGAAATCACGCTTGGCCAACTTTTCATgcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170118 lncRNA upstream 183470 5724880 ~ 5727587 (+) True G143644
TU170093 lncRNA upstream 258171 5649094 ~ 5652886 (+) True G143622
XR_004578802.1 lncRNA upstream 297749 5610562 ~ 5613308 (+) True LOC117598079
TU170069 lncRNA upstream 306397 5600363 ~ 5604660 (+) True G143601
TU170039 lncRNA upstream 419219 5491294 ~ 5491838 (+) True G143577
TU170260 lncRNA downstream 10070 5922811 ~ 5923752 (+) True G143766
TU170268 lncRNA downstream 19840 5932581 ~ 5936329 (+) True G143772
TU170347 lncRNA downstream 65361 5978102 ~ 5984378 (+) True G143832
TU170524 lncRNA downstream 443576 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 509395 6422136 ~ 6428434 (+) True LOC113547099
XM_026947346.2 mRNA upstream 7594 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA upstream 7594 5881846 ~ 5903463 (+) True n4bp3
XM_034307400.1 mRNA upstream 49850 5854230 ~ 5861207 (+) True LOC113547110
XM_026947344.2 mRNA upstream 60999 5838626 ~ 5850058 (+) True LOC113547120
XM_026947312.2 mRNA upstream 163117 5740907 ~ 5747940 (+) True gpx3
XM_026947347.2 mRNA downstream 55001 5967742 ~ 5975213 (+) True ppp2caa
XM_034307233.1 mRNA downstream 85726 5998467 ~ 6037800 (+) True LOC113547108
XM_034307224.1 mRNA downstream 85726 5998467 ~ 6018704 (+) False LOC113547108
XM_034307226.1 mRNA downstream 85726 5998467 ~ 6018704 (+) False LOC113547108
XM_034307227.1 mRNA downstream 85930 5998671 ~ 6018704 (+) False LOC113547108
TU170101 other upstream 163113 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1406002 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1406002 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2448886 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2514990 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 674470 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 867248 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 870775 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 884068 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 884231 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile