RNA id: TU170268


Basic Information

Item Value
RNA id TU170268
length 2946
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G143772
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5932581 ~ 5936329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TActtataatattttcatatacaCAAAGGAGTACAGTACAGTTGAAGAGGATTCTAACATGGCAGCAACGACTTTGCCCCACTTTTCCCCAGACCAAACCGGTGTGTGTTTCGTCTTCTCTGCAGCACCAAAGCACACTCGGATTCGGCAACTAACACgccatacaaaaacacacatacgcacacacactcacgcacacgcgcacacacagaaaTGTATGACAAAAGTGTAAAACAGTGAGAACTGATTCTACAAAGTCCATAAATATGAAGAGACTAAAGGAAAGCAAACATGCTTTTTTTGACAAGAAAGATGGCTGCTGCAAAGCTTACAACAAAAAGAACGAAAACAAGTGGGGCAGAATCTTTAACATTCAGTGGATATCAAAAGAGAATGATTGTAAGGCCAAAACATTGttcaaacaataataaaacatgagggTCCTTCATTTGGAACAGCAGTCTCTTGCTTGCGCTGGGTAAATCACTAGTCGGGAAGTTTTCTCATTCCAGTCTGTTGGATcggaTACAGTCCATGACTGGAGTTCGGCACGGATCATTTTTGCAAAAACCCTCAAAACCCTCTGAAGAATCGTTTTTGAGGATATTTCTTGAAATGTTTTCACTGAGGCTCTCTGCATTCACTGAATTCAGTGTCATGAGTATACTATTAGTTTTGAGTAATTAAATAGACAAAccaaacaatataaaaataagaactGAAGATTAGAATTGTAGAATTGAAGAGTAGTATTTCGTTTAAAAGTCCATGCACTGAACCGCTTTCACGAATCCTGACTGAGTCGAGGTGTGTAAAGTTTATTTCGACAGCAGTTAGTTACCTTAGATAAAGGCGTACGTACAAATGAACATGTCTCTCCTACAACGTGCAGCACAGAAATCATACCCGATGCCTGGAATGTCATAATAAAGCTCAAAGTAAAACTGTAGTTCTGGTCATTTCGGTTTGTTTTGCTGTCGTCTCCACCACAGAAGGCAGTTCTTTTCCAACTCTCTACTCCACCTCTTAAAGTCGAAATTCACGAGTGGGGATTAAGTCAAAATCCTGAAAATCCTGTTTGGTGTGATGCAGTTAAACTGTTAATGTACTcttgatcactttttttttttttatccactgtTAGGGCTTGTGATTGCCAAATGCTTCTTCTAATGAAATTTATTGTCACCAAATTCTGAATGGGACACACAGAACCAGCCTACTAATTATACGAAAGCATGGTCAATATCCAAAAGTGCATCACTGAGATCAAGGATCATCAGTCTTATCTGAATTTCACCCaggtggctgcaggttttcattctaaCTCAGCAGGACAAACACCTGATTCCATCTCAAATATAATTTGAAGTGGAGAATTATAATTTAGTACAGCTACTAACTGGCTGAGTGGTGCGGTGGTCCAGTTACAGCGGTGGTCCAGTTACAGCGTACACACAAGTGGGATTTGACTACCAGAGTCTCGATTCTGAACGAGTTATTTAAATCTGTCAAGCTATAACTTCCAAGATTTGTTCATCACTAATATGACCTTCCTGGCTCTAAAGGTTTCCTGGTACCACCTGGTATCCTTAAATAACCACAACTGGGCCAAGGCTCACTTTTTAcagaatctgtttttttatggAAGAACTGAgaaactaattaactaatttgACCCAAACACCAATCTATGTAATCAGAACCAGTGTTATCCATTTAAAAGTCCAGTTTTTTTTAGATTCATGTGTTCTTAAAGACTTGGAGTCATCTTGACAAGTGTTGCTGCCCCACTTCAAGCTTACCAGATGTCTTCCATTGTTCCATCCCCGTCCATGGTTTGCCaaagataaaaatgtaaacagtagGTGGAgatgacaaaacaaaaagaaacacaaagaagCACCAGACAGTAACTTTATACCCAATACAGGACTTCTGACTGAACAGCCAAAGGTCCACAGCACCACTTTATTTTTCCAGTCCCCTTTGTCAAAGTGGACTTGGTTAGAGAAGGCAAGCTGACCTCTTTTTTAATCTCAGCATGTTGCCCAAGTCCGTTAGAGTCAAAAAGAGCTGCTTTGCATCCAGCTGAGCGCGCACTAGCTGATCTCTGAGCCCCTCCAGATAAGAGcgctgatctgagatcagattCCCTGCTTCATTCCTACAGGCTACAAAGCGTAACGAACGGAGAGATGGAACTTTGCCTATCTCGCTGCCCAATGACTGAGACCGTCTAGCGAGCGAGTGCgtgatggatgaatggatggatgaacggatggatggatttgtGGATAGTAAACACAAATTGCTCACTTCCCCCTATATGACTCGTCCACTAAACCTTCAGCGTCAAAGTCTTCATCCACGCAACTGTCGTCATCCCACTCGTCCTCATCCCACTCCTTTTCAAATTCCTCCTCTTCGTCCTCATCTTCGAATTCATCGTAGTCCACCTCCCCGTCCTCATCTTCGTCTTCTATGATCTCGAGTCCCATATCCTCACCCCCAATCAGCCCTTCCACCACCTCTCCATCCTCTACCTCGGCCACGACGTCATCTTTCACCTCTTTAGACAGAGAAGATGCAGGAAGCAGGTCTTCGTCCAACACTACGTCATCCTCAAAGGGTACTCGCTGGCTGCTGTAGGGCGCTCTCCTGGGGGCGGGAGGGATGTAGAGCTCACTGGTGGGCGGAGTTAACCTGCACTTGGCTACGCTGGGTAGCGCGGATAAGACAGGCATTCCCGGGGTGTACTCGCGAATCTCTCCAGGTTCCAGGGGGTCGGGGCCACACGGGTCGTGCTCGCTGCACGAGAGCTTGCCGTCCAACTTGGAGATGAAGAGCATGCCGTCACGATGCTGCTTGCAGTACGAGCTGGGGCACATCTCGCAGAACGATGCCGCCTCCTTGCCACACTCGTTACACTGGTGCCACGGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170260 lncRNA upstream 8829 5922811 ~ 5923752 (+) True G143766
TU170248 lncRNA upstream 19840 5910983 ~ 5912741 (+) True G143757
TU170250 lncRNA upstream 19840 5911057 ~ 5912741 (+) False G143757
TU170118 lncRNA upstream 204994 5724880 ~ 5727587 (+) True G143644
TU170093 lncRNA upstream 279695 5649094 ~ 5652886 (+) True G143622
TU170347 lncRNA downstream 41773 5978102 ~ 5984378 (+) True G143832
TU170524 lncRNA downstream 419988 6356317 ~ 6357920 (+) True G143987
XR_003404779.2 lncRNA downstream 485807 6422136 ~ 6428434 (+) True LOC113547099
TU170785 lncRNA downstream 608043 6544372 ~ 6544916 (+) True G144221
TU170834 lncRNA downstream 692022 6628351 ~ 6684107 (+) True G144256
XM_026947346.2 mRNA upstream 29118 5865457 ~ 5903463 (+) False n4bp3
XM_026947345.2 mRNA upstream 29118 5881846 ~ 5903463 (+) True n4bp3
XM_034307400.1 mRNA upstream 71374 5854230 ~ 5861207 (+) True LOC113547110
XM_026947344.2 mRNA upstream 82523 5838626 ~ 5850058 (+) True LOC113547120
XM_026947312.2 mRNA upstream 184641 5740907 ~ 5747940 (+) True gpx3
XM_026947347.2 mRNA downstream 31413 5967742 ~ 5975213 (+) True ppp2caa
XM_034307233.1 mRNA downstream 62138 5998467 ~ 6037800 (+) True LOC113547108
XM_034307224.1 mRNA downstream 62138 5998467 ~ 6018704 (+) False LOC113547108
XM_034307226.1 mRNA downstream 62138 5998467 ~ 6018704 (+) False LOC113547108
XM_034307227.1 mRNA downstream 62342 5998671 ~ 6018704 (+) False LOC113547108
TU170101 other upstream 184637 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 1427526 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 1427526 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 2470410 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 2536514 3388253 ~ 3396067 (+) True LOC113523845
TU170815 other downstream 650882 6587211 ~ 6593605 (+) True LOC113547098
TU170969 other downstream 843660 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 847187 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 860480 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 860643 6796972 ~ 6798904 (+) True LOC117598156

Expression Profile