RNA id: TU170815


Basic Information

Item Value
RNA id TU170815
length 3510
RNA type TUCP
GC content 0.36
exon number 5
gene id LOC113547098
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6587211 ~ 6593605 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacaatgtgtgtgtgtgtgtgctctaaggacaaaaagaagcagaaagagAGTGTGTTCAGTTCTTATCTCATCCTGTCAGAACCTGGCAACCAGACGCTGTAGgccctccaccaccaccacactgtGTACTCTGTagtttaaacatttacacacacatacacacacacacacacacacacacactcccttacACCTGACACAGACCTTCCCACACACTCGTCATACATCTCTGAGGCTCCAGGTCTGTAGTTGATGAAGGTGAGGGGAGAGAAGAATGGGACCTCGCACAGCAGtcggACCATCCAAACAGGAGAAGGTCGCCCCTCAGTATCGTCATGGTAGCAGGAGTGACGGGTATTACAATGATTCTCCTGTGCTCAATAACCCaaagtcagtatTGAAGAGGCAGGTGAGTCCAGAAGAGCTGCAGACTCCTGGAGGGAAGTACCTAAAGAGGACATTCACCatcGTTGGGGATGCTGTGGGCTGGGGGTTTGTTGTGAGAGGCAGTAGTCCATGTCACATTCAGGCTGTTGATCCAAGCGGaccagctgctgctgttggaaTGAAGgtatgtcagtttgtagtgtgtgtaaatggagTGAATGTTTTGGAGATGGACTATCGGACAGTCAGTCATCTCATCCTCACCGGGCCTCGCACTGTTGTCATGGAGGTGATGGAGCCACTCAACTGCTGAGGATACGACTAAAGAAGCTACTCTAATAATTCAAATAAGAATTCaaaaagaattgaaaaaaactaaaatactgTGAGCTGCATAACATACAAGGTGATGATTTGTACCTTGGTGCATCAGTCTGGTCAAAAAGAAACGAAGGTATAAATTGTGACAGTACCCATATTTCTAAAGAGCAACCCCTTTTGCTGTCTGGAAAACAGCTCAGATGCAGAGTGAAATATTTGACCTCAACACTATCTATTGGAAGGCAAAGAAGCcaaaacttaaaaatatttagataGTGAGTTtctaaaatgataaaatggtaACTTATACTGTGAGATCCAAAGAATAGTTCTCAGTTATAAGATTTTAGATGTTAGCTGATCTTTTGTAAACAGACCTTaaatacagtgaggggaaataagtattcagatactttttaatatatatattgttatttaatatacttccagtgcatctTTCCTCTTCAAATGTACACGCATaatgtcttttgtctttttacttataaatatgaacaaaaccatatgtattcataagcataaaacaaatatatctttaaaaaattgaTAGGGGAAAATGTATTCGGAtactatataaaatacaaatatatgttAGACAAAAAGTAATCAAATTTacgatgcaaaaaaaaagtctttgagCAAATTGCACCCGGtgacattattataaaataataatgttgccATTGGTTGGGAAGATTTACGCAACAAGTAGCAGTCATAGTGAAGGTGAAgaagcttcctaaagttctcaggtACAACATCATTAAACATCACTCAAATGGAAATGGCTCCAGAGCCATTGCAAAGaacttaaacatccctgtcagaaCAATTGTTTTGATCACATgtaggtggaaagttcagggaACCACAACTAATCGTCCCTGGACAGGTGCGTCACACAAGATTTCACAACATACCCTCAGAATAATGATAAGAAAGATAaaagagaagccagcagtcactggaaaagagttgcaggagcaacagcaacagcaggagcaacagttacacacagaataacaagcaatgaactgcaccacaATCATCTTCGTACCGACACCTCACACAAAACTTctctgctaaaaaagaagcacataGATGTGCATCtaaaagcatttacacaaatcagaactcttttggaaTAATATACTCTCACATACAAAAAGAACTCTTTGCCAATAATCAGCTCATCATGTGAGAAGGAAGGGTTACGCCTGATCCTTAAGAACACCATATTCACATTGAAGCACggggtgggagcatcatgatatggggctgcttctctgcaaatggTATTACGGGGCATTACATGTCATGATTGCcagaaacatgaatggagcgaTGTACTGAGACGTAcaagaggagaatttaatctcatcagcTAAGAAAGTGAATCTGGGGTGAAGATGGATGGTTCAATAAAACAACACCCCCAAACATACAGCACATAATAACTcacataaaaaagaaagtgaaggtGCTTGCAAGGACTAGCTTTATCTCCTGACAttatttatggaggattttgatactgaagataaattgccaagaggaatgggccaaaattgtaccacaatgctgcaaaaagagAATTAATTCTTACTGTAGATGCCTCGAAGCTAATTAGtacaaagtactaatgttgaTCATTTGTGGTGTCTAAATGCATTTTTACCtatcaaaagacattatgtgtctAAATTAGAAGTGGATATATACATTGCaagtatattaaataagaaaagcaagtggctaaatatttatttcccctcactatATTAGCAGATATTGATTAGTAGATCTCAGTTTTCAGTAGAAGTTATCAGTACAGATTTTAGTTATTGATTATTTCAGATATTGATTTGTTGAGCGCCATTTTCTCAGCAGTTCTTATTTAGCAATTGCATGTGTAAAACCTAAAATTAAACTACCATAGacataatcataaaaaaatatagacaCAAGTCACAAGAGCCCTAATGTTAGAGTGGGATAAGGTGTGACTACacttagagctgctgttacagaaaatttatcaaaaacaaaacagaatttaacagtgctgtggtataatggcTCATAAAAATATACACCTTTAAAGCACccttaatatttattatgaacatttttaaataacataaattagtgattgctttaatttatttctaattataaGTATCTTATTATAAGTACAAActatataatgtaaattataCACTAAACATAATtacaatgatttattttgtaaaatttaaTTCCAAACTTAATTATATTTAAGTGActtaattcattataaatacaAGCGCCGAGGAAAGTATTACCCAAAATATAttgctttataattattctAATTATCTGAACTACATTCATCGCTTTTACTAGACAATGAGTTTTTACTTTAATAGACGTTTAATAATGACGATTATTGTAAATTAACATACTAAATgtacctctgtctctctgttacaAGTCTAAATATGATTCATTATTGTGCATGTACacactgtaattatttaaaCGACATGttctgtgtgttatgtgtgttatgGTAGAGCACTTgcctgtgactgtgtgtttctGGCATACAATCTCATTGCTTAACTTAGTAAAAGATATTTATCTTTTAACATGGCTGATACATATCTGGTTAATTGGTTTAtacttttttagttttcttttatGCTTATATGTCTTTGCCCATGTGTGCACTTCAAATAAATTTCTATACACGCAACTAGTTTGAATGTTCTTAATTTTCACACATAGAGTTGTGATATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170785 lncRNA upstream 42295 6544372 ~ 6544916 (+) True G144221
XR_003404779.2 lncRNA upstream 158777 6422136 ~ 6428434 (+) True LOC113547099
TU170524 lncRNA upstream 229291 6356317 ~ 6357920 (+) True G143987
TU170347 lncRNA upstream 602833 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 650882 5932581 ~ 5936329 (+) True G143772
TU170834 lncRNA downstream 34746 6628351 ~ 6684107 (+) True G144256
TU170960 lncRNA downstream 189733 6783338 ~ 6830066 (+) False G144353
TU170964 lncRNA downstream 189733 6783338 ~ 6915019 (+) False G144353
TU170970 lncRNA downstream 189733 6783338 ~ 6877401 (+) False G144353
TU170981 lncRNA downstream 214366 6807971 ~ 6826908 (+) True G144359
XM_026947395.2 mRNA upstream 171825 6404746 ~ 6415386 (+) True proza
XM_026947309.2 mRNA upstream 284646 6297766 ~ 6302565 (+) True ndufb9
XM_034307383.1 mRNA upstream 339506 6120616 ~ 6247705 (+) True syngap1a
XM_026947306.2 mRNA upstream 469674 6108863 ~ 6117537 (+) True scn1bb
XM_026947307.2 mRNA upstream 469674 6108863 ~ 6117537 (+) False scn1bb
XM_026947355.2 mRNA downstream 12216 6605821 ~ 6679326 (+) True LOC113547127
XM_034307439.1 mRNA downstream 85879 6679484 ~ 6680169 (+) True LOC117598051
XM_026947362.2 mRNA downstream 99188 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA downstream 104707 6698312 ~ 6733914 (+) True LOC113547131
XM_034307653.1 mRNA downstream 659715 7253320 ~ 7264696 (+) False LOC113529730
TU170101 other upstream 839267 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 2082156 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 2082156 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 3125040 3397670 ~ 3462171 (+) False G142576
TU168853 other upstream 3191144 3388253 ~ 3396067 (+) True LOC113523845
TU170969 other downstream 186384 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 189911 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 203204 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 203367 6796972 ~ 6798904 (+) True LOC117598156
TU170950 other downstream 216584 6810189 ~ 6870576 (+) False G144353

Expression Profile