RNA id: TU170834


Basic Information

Item Value
RNA id TU170834
length 3030
lncRNA type read_through
GC content 0.34
exon number 2
gene id G144256
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6628351 ~ 6684107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatatatatatatatatatatatatatatatatatatatatatatatatatataTACTGGAATTTCATTGTTGGTGATTTATGTATAGCgatatttaatgttttctttgtctGTATAGTATAATGTTATACATCTGGTAGTATAACATTAATATTCTATACATGTAACTACTAAACCttataagttaaaaaaaaaatttaaaaaggacATTGACAGCCCTAGTAATTTCTGTTACATGTGATGTGACATTGTGGTGAGGTTCTCCGTAATAGATTATGCACTGTATCACAACACCCATTCATGCAGGTAGCAACTGTAGAGTTTTAACTACAGCctttattatagatttatttttatcatttttttggGCACACACTTTTATCCAGAGCTTGTAAGTGAGGCAGACTACAatcaaagcacagagctgagcagttgaaggttaagtgGCTCTCTGGTAGACCTGGGACCGATCATAAGCACCGAGCTACTACTACATGGGTAAGATTTAAAATTCTATAAGTATGATAAGATTTAAAAGGGCTGATTTGAAAGATTTGGTGGAATGAGAGAAAAGGGCATGCAGAGCAGTGAGGTGTGATGTGTGAAACTCTTTAAGTGCCTGATATACACAGCAGAGATTCTCTTCTTCATTGCCATTTTGCTCTGTCTTTCACTTGCTTCCAGCAATCAGAAGTGTGCTGTTGCTCAGTCAGATATTGTACACTGCCAGTCAAGAATATCTCAACACATGGAGTTTGTTTTGTTACAGCTGATAACCTGTTAGTTCCGCCAGGGCATGGTAATAAAgggagtaaggaataaaacactcggggacctgctgttacagcaaaataatcaacgactgggtggtgtgatgaggcccgatgtgaagcagagttacactTACCACCgagaggttgattattttccaataacaacatccaaatgtgttttattcctcttataccacagcaatttgccatagattacatttttttaatcaaagaatGATGCAAAATTCAAACATCTGACAtcaaactttttatccatttatagttgtaatgttgtggaatttgtGCAAAGAAAAGGTCAGTTCCTGTTGGCATTTACATTGTAGCAGttgtaaacagtcatttcctcgtgaagcttttttgttttttactataagacaaaaatatgcaagaaactagaaagcacaaagtcctgaagactccttccataaatgttttcttacagaaaacttcaccatgtcagtgATTGCAATGATTGATGTTAAATAAGATTAAATATTAGATTACATGGAGTCTTTTCCATACACATCCCTgagaattagttgttactatagaaaagataatgtattaaaatgagtacattcatataaatggatttgcagctgtactactgtcagagctgctgttattgaaaagtGAATCCTGAAAATTCACcagcacacaaacaaaaacctaACCCTTTGTGTGTAAAGATTTAACTCTCACATCCTGATGCAACCCTACATGATGCCTTGTTAGAGGAAGATAGACAAATTAAACTCCCAGGAGCCATCACTCTCTTGTCTACAAACCTTTTTCATTAGTTTCTCTCTAACTACTGAATAAATCAGTGTAGATGCCAAGGAATTAGAAATGTTAAAGTAAAAGAAtagaaaacaatgaaaatttGCATAGAATGTAATCAAACCATGAACAAAATCACTTCAAACTGGTCCagagtgaaaacattttttttaaagtgcttaaCTGGTTAATAACGTCATTTTTCCATTCTAGTATGATTTCAAGAAAGTATAGAGTAAATTCCTGTCCAGAATTCCACACTTGTTGCACGCTGAGTCACAGGAAGATATGACGTTGGATAGCTGCATTTTAGAAGATGGAACATTGGCAGgaaatctgtattttaaaaaaaaggaatttttatAAAGTTTCTGCAAGCATCAAGTTACACTGCAAATTAGAAGGATGCTCTGAGGAAATATCAGGCAATCGTGGTAGTAATCTGCAGCATCTGAGCAAAGTAATCATCCTTCACTTTAGGCAGAAGTCTGCAAAAGATCAACTATTGTTAGCGCTAGTTAAGAGGGTGACAAATGACTCTTGATCACAGGTAAAGAAGGATATTAAtcgttgttttatttctttctgatGGTTTCCACAAGGGGGCCTAGAACCCTGGAGCAGGagcattaaaatatcatttctgtTCAGAAAGAaccataatgaaaaataaatcatctcTAATTCCTGGTTGATACTGATAATACACTTCaagataaataactaaataataacatatGACTTTAAGTGGTTAAGCCTATAGATGAAAGACTCATTGTCAATGCTAGTTGTTTAAATATGTTAGTGAGCAAGAACTAAATTGTTACAAACATTTCTCCATTTACATGTCCCTTTtcattatttccagttttaaatgagCCCATTGCTTATACATGCcaaaaaaggataaaatatacattttgactggcagtgtaaaTGAGCTTTCCTATTGACAGCCATTTGTACAAACCAAcatcattttgtttacaatgtttacaatattatattttctaaCAATCTGAAATTTGACTTTTGGCTTGTATTCTGGTTTTAGCATTGAATTCATCTCCATGTAAACATTCGAGTACAGATTCCTCTGTATTAAGTGCCTGTTCATAGTATTAATCATGTATCCTAAATTCATTCTAACTAATTCTGTAGATGAGTATAGTTTGTAAGAGTGCTTTATCTCAAACATAAAGCAGTGGTTGCTATGATTTGTTTATATGAGATGTTGGCAGTTTCATTAAGGGTGAAACTTTCCATTTTGACCGTCCaaattatttattgtgtttcaTTCCTGGTGTCTTTATAATATAATGGTTCTGTGCTTATATTGTACAATacctacataaacataaacagaagtTTCTCAAATTATGAATACGTATTGTGATTAGCTTGCTGTTGTACATGCCAGCTGATGTTCTTCATGTTTATAAAAACCCAATCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170785 lncRNA upstream 83435 6544372 ~ 6544916 (+) True G144221
XR_003404779.2 lncRNA upstream 199917 6422136 ~ 6428434 (+) True LOC113547099
TU170524 lncRNA upstream 270431 6356317 ~ 6357920 (+) True G143987
TU170347 lncRNA upstream 643973 5978102 ~ 5984378 (+) True G143832
TU170268 lncRNA upstream 692022 5932581 ~ 5936329 (+) True G143772
TU170960 lncRNA downstream 99231 6783338 ~ 6830066 (+) False G144353
TU170964 lncRNA downstream 99231 6783338 ~ 6915019 (+) False G144353
TU170970 lncRNA downstream 99231 6783338 ~ 6877401 (+) False G144353
TU170981 lncRNA downstream 123864 6807971 ~ 6826908 (+) True G144359
XR_004578858.1 lncRNA downstream 129187 6813294 ~ 6814838 (+) True LOC117598166
XM_026947313.2 mRNA upstream 34791 6587367 ~ 6593560 (+) False LOC113547098
XM_026947395.2 mRNA upstream 212965 6404746 ~ 6415386 (+) True proza
XM_026947309.2 mRNA upstream 325786 6297766 ~ 6302565 (+) True ndufb9
XM_034307383.1 mRNA upstream 380646 6120616 ~ 6247705 (+) True syngap1a
XM_026947307.2 mRNA upstream 510814 6108863 ~ 6117537 (+) False scn1bb
XM_026947362.2 mRNA downstream 8686 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA downstream 14205 6698312 ~ 6733914 (+) True LOC113547131
XM_034307653.1 mRNA downstream 569213 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 569214 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 569214 7253321 ~ 7264696 (+) False LOC113529730
TU170815 other upstream 34746 6587211 ~ 6593605 (+) True LOC113547098
TU170101 other upstream 880407 5740958 ~ 5747944 (+) False gpx3
TU169682 other upstream 2123296 4484843 ~ 4505055 (+) False fhl3b
TU169683 other upstream 2123296 4484883 ~ 4505055 (+) False fhl3b
TU168849 other upstream 3166180 3397670 ~ 3462171 (+) False G142576
TU170969 other downstream 95882 6779989 ~ 6798904 (+) False G144353
LOC113547145 other downstream 99409 6783516 ~ 6785437 (+) True LOC113547145
TU170957 other downstream 112702 6796809 ~ 6870576 (+) True G144353
LOC117598156 other downstream 112865 6796972 ~ 6798904 (+) True LOC117598156
TU170950 other downstream 126082 6810189 ~ 6870576 (+) False G144353

Expression Profile