Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU170957 |
| length | 1370 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 3 |
| gene id | G144353 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 6779989 ~ 6919661 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU170834 | lncRNA | upstream | 112702 | 6628351 ~ 6684107 (+) | True | G144256 |
| TU170785 | lncRNA | upstream | 251893 | 6544372 ~ 6544916 (+) | True | G144221 |
| XR_003404779.2 | lncRNA | upstream | 368375 | 6422136 ~ 6428434 (+) | True | LOC113547099 |
| TU170524 | lncRNA | upstream | 438889 | 6356317 ~ 6357920 (+) | True | G143987 |
| TU170347 | lncRNA | upstream | 812431 | 5978102 ~ 5984378 (+) | True | G143832 |
| XR_004578856.1 | lncRNA | downstream | 556 | 6871132 ~ 6874093 (+) | True | LOC117598165 |
| TU170990 | lncRNA | downstream | 2243 | 6872819 ~ 6899792 (+) | False | LOC117598165 |
| XR_004578860.1 | lncRNA | downstream | 5650 | 6876226 ~ 6877268 (+) | True | LOC117598168 |
| TU171008 | lncRNA | downstream | 62004 | 6932580 ~ 6933301 (+) | True | G144382 |
| TU171002 | lncRNA | downstream | 70125 | 6940701 ~ 6942295 (+) | True | G144376 |
| XM_026947362.2 | mRNA | upstream | 62895 | 6692793 ~ 6733914 (+) | False | LOC113547131 |
| XM_026947363.2 | mRNA | upstream | 62895 | 6698312 ~ 6733914 (+) | True | LOC113547131 |
| XM_034307439.1 | mRNA | upstream | 116640 | 6679484 ~ 6680169 (+) | True | LOC117598051 |
| XM_026947355.2 | mRNA | upstream | 117483 | 6605821 ~ 6679326 (+) | True | LOC113547127 |
| XM_026947313.2 | mRNA | upstream | 203249 | 6587367 ~ 6593560 (+) | False | LOC113547098 |
| XM_034307653.1 | mRNA | downstream | 382744 | 7253320 ~ 7264696 (+) | False | LOC113529730 |
| XM_034307652.1 | mRNA | downstream | 382745 | 7253321 ~ 7264696 (+) | True | LOC113529730 |
| XM_034307651.1 | mRNA | downstream | 382745 | 7253321 ~ 7264696 (+) | False | LOC113529730 |
| XM_026918781.2 | mRNA | downstream | 511502 | 7382078 ~ 7400425 (+) | True | LOC113529540 |
| XM_034307142.1 | mRNA | downstream | 518923 | 7389499 ~ 7400424 (+) | False | LOC113529540 |
| LOC113547145 | other | upstream | 11372 | 6783516 ~ 6785437 (+) | True | LOC113547145 |
| TU170815 | other | upstream | 203204 | 6587211 ~ 6593605 (+) | True | LOC113547098 |
| TU170101 | other | upstream | 1048865 | 5740958 ~ 5747944 (+) | False | gpx3 |
| TU169682 | other | upstream | 2291754 | 4484843 ~ 4505055 (+) | False | fhl3b |
| TU169683 | other | upstream | 2291754 | 4484883 ~ 4505055 (+) | False | fhl3b |
| LOC113529731 | other | downstream | 10081 | 6880657 ~ 6882164 (+) | True | LOC113529731 |
| TU170951 | other | downstream | 24000 | 6894576 ~ 6908667 (+) | False | G144353 |
| TU170948 | other | downstream | 24529 | 6895105 ~ 6919661 (+) | False | G144353 |
| TU170958 | other | downstream | 35977 | 6906553 ~ 6908667 (+) | False | G144353 |
| LOC117598150 | other | downstream | 36613 | 6907189 ~ 6908576 (+) | True | LOC117598150 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| eurasian perch (Perca fluviatilis) | TU186449 | False | 785 | TUCP | 0.51 | 2 | NC_053124.1 | 33745731 ~ 33748030 (-) |
