Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU170960 |
| length | 830 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 4 |
| gene id | G144353 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 6779989 ~ 6919661 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU170834 | lncRNA | upstream | 99231 | 6628351 ~ 6684107 (+) | True | G144256 |
| TU170785 | lncRNA | upstream | 238422 | 6544372 ~ 6544916 (+) | True | G144221 |
| XR_003404779.2 | lncRNA | upstream | 354904 | 6422136 ~ 6428434 (+) | True | LOC113547099 |
| TU170524 | lncRNA | upstream | 425418 | 6356317 ~ 6357920 (+) | True | G143987 |
| TU170347 | lncRNA | upstream | 798960 | 5978102 ~ 5984378 (+) | True | G143832 |
| TU170973 | lncRNA | downstream | 38348 | 6868414 ~ 6908667 (+) | False | G144353 |
| XR_004578856.1 | lncRNA | downstream | 41066 | 6871132 ~ 6874093 (+) | True | LOC117598165 |
| TU170990 | lncRNA | downstream | 42753 | 6872819 ~ 6899792 (+) | False | LOC117598165 |
| XR_004578860.1 | lncRNA | downstream | 46160 | 6876226 ~ 6877268 (+) | True | LOC117598168 |
| TU171008 | lncRNA | downstream | 102514 | 6932580 ~ 6933301 (+) | True | G144382 |
| XM_026947362.2 | mRNA | upstream | 49424 | 6692793 ~ 6733914 (+) | False | LOC113547131 |
| XM_026947363.2 | mRNA | upstream | 49424 | 6698312 ~ 6733914 (+) | True | LOC113547131 |
| XM_034307439.1 | mRNA | upstream | 103169 | 6679484 ~ 6680169 (+) | True | LOC117598051 |
| XM_026947355.2 | mRNA | upstream | 104012 | 6605821 ~ 6679326 (+) | True | LOC113547127 |
| XM_026947313.2 | mRNA | upstream | 189778 | 6587367 ~ 6593560 (+) | False | LOC113547098 |
| XM_034307653.1 | mRNA | downstream | 423254 | 7253320 ~ 7264696 (+) | False | LOC113529730 |
| XM_034307652.1 | mRNA | downstream | 423255 | 7253321 ~ 7264696 (+) | True | LOC113529730 |
| XM_034307651.1 | mRNA | downstream | 423255 | 7253321 ~ 7264696 (+) | False | LOC113529730 |
| XM_026918781.2 | mRNA | downstream | 552012 | 7382078 ~ 7400425 (+) | True | LOC113529540 |
| XM_034307142.1 | mRNA | downstream | 559433 | 7389499 ~ 7400424 (+) | False | LOC113529540 |
| TU170815 | other | upstream | 189733 | 6587211 ~ 6593605 (+) | True | LOC113547098 |
| TU170101 | other | upstream | 1035394 | 5740958 ~ 5747944 (+) | False | gpx3 |
| TU169682 | other | upstream | 2278283 | 4484843 ~ 4505055 (+) | False | fhl3b |
| TU169683 | other | upstream | 2278283 | 4484883 ~ 4505055 (+) | False | fhl3b |
| TU168849 | other | upstream | 3321167 | 3397670 ~ 3462171 (+) | False | G142576 |
| LOC113529732 | other | downstream | 526 | 6830592 ~ 6834449 (+) | True | LOC113529732 |
| LOC117598033 | other | downstream | 6989 | 6837055 ~ 6839420 (+) | True | LOC117598033 |
| TU170974 | other | downstream | 7158 | 6837224 ~ 6843968 (+) | False | G144353 |
| TU170947 | other | downstream | 7738 | 6837804 ~ 6856856 (+) | False | G144353 |
| LOC117598034 | other | downstream | 11871 | 6841937 ~ 6843964 (+) | True | LOC117598034 |
