RNA id: TU170968


Basic Information

Item Value
RNA id TU170968
length 847
RNA type TUCP
GC content 0.45
exon number 3
gene id G144353
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6779989 ~ 6919661 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTACCACATTCCCCCAATCTTACTGTAATTCTGAATCTACTACAGAGTTATTGTGTGAATTTTGCTTCTGGGGTCAGATGGAGATTTTCTGGAAAATACTTTTAGGTCtaagatgcataaataagtgaATTAAAGAGAGAAGCTTAAACTTTCTTTGGATGGTGTTTGTACTGAATGTTAATGAGTTTCTCACTGTAGTGGATTTATGGTGGAAGAAGCAGCATCAGTGTTGGCAGTCTCACCCAGCCCACTGTGACAGTTCTGCCTCCCTCCAGTGTGGACCTGCAGCAGGAGAAGGTCACACTCATGTGTGTGGCCTATAAGGGCTTCCCCTCGGACTGGAGGCTGAGCTGGAAGGTTGATGGGAGCAGCTTGAGCTCGGGGGAGAGCCACAGCACCGCCGTTCTGCACGTGGACGGCCTTTACAGCTGGAGCAGCACGCTGAGCATCCACCCGGAGCAGTGGAGGAACAAGGTGGTGACCTGTGAGGCCTCCAATGACAACCAACCTCCTGTGGTGAGCTCAGTGGACAGAGAGCAGTGCTAAGAGctgtgagctcacacacactttactcagCTCACCTTCTACTGCTTCACTGTGTGTTACATGTGGCCCACTTTCATAATTTCATTTGCGTTTTTAACGGgagctcacacactcctcagttTAAATCAgcttttcttcttcattatcACCTAAatatgtgttaagtgtgtgtatcACTGCAATGTTCTGCtttgaattattaataaaagcCTTTGAATCAGTAAACACTTTTTCTTTACATTGTTGATtatgcacatcacacacaaatcacCAATGCATCTGTCTCAGTATGTTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170960 lncRNA upstream 32641 6783338 ~ 6830066 (+) False G144353
TU170983 lncRNA upstream 34704 6824401 ~ 6828003 (+) True G144361
TU170981 lncRNA upstream 35799 6807971 ~ 6826908 (+) True G144359
XR_004578857.1 lncRNA upstream 46771 6813767 ~ 6815936 (+) False LOC117598166
XR_004578858.1 lncRNA upstream 47869 6813294 ~ 6814838 (+) True LOC117598166
XR_004578856.1 lncRNA downstream 556 6871132 ~ 6874093 (+) True LOC117598165
TU170990 lncRNA downstream 2243 6872819 ~ 6899792 (+) False LOC117598165
XR_004578860.1 lncRNA downstream 5650 6876226 ~ 6877268 (+) True LOC117598168
TU171008 lncRNA downstream 62004 6932580 ~ 6933301 (+) True G144382
TU171002 lncRNA downstream 70125 6940701 ~ 6942295 (+) True G144376
XM_026947362.2 mRNA upstream 128793 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 128793 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 182538 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 183381 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 269147 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 382744 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 382745 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 382745 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 511502 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 518923 7389499 ~ 7400424 (+) False LOC113529540
TU170947 other upstream 5851 6837804 ~ 6856856 (+) False G144353
TU170952 other upstream 5851 6855429 ~ 6856856 (+) False G144353
LOC117598035 other upstream 5904 6855190 ~ 6856803 (+) True LOC117598035
TU170974 other upstream 18739 6837224 ~ 6843968 (+) False G144353
LOC117598034 other upstream 18743 6841937 ~ 6843964 (+) True LOC117598034
LOC113529731 other downstream 10081 6880657 ~ 6882164 (+) True LOC113529731
TU170951 other downstream 24000 6894576 ~ 6908667 (+) False G144353
TU170948 other downstream 24529 6895105 ~ 6919661 (+) False G144353
TU170958 other downstream 35977 6906553 ~ 6908667 (+) False G144353
LOC117598150 other downstream 36613 6907189 ~ 6908576 (+) True LOC117598150

Expression Profile