RNA id: TU170984


Basic Information

Item Value
RNA id TU170984
length 374
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G144361
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6824401 ~ 6911988 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTACAATCTGACTGAGGGAGGTTTTTGTATGACTctataacactgtgtgaacCAGTAGCCAGTGATATCATggtaactctgacagtagtaatctcctgcatcttcagtctggactccactgatggtcagagtgaaatcagatccagatccactgccactgaaatgaGCTGGAAAACCTGACTGTAACTGATTTACAAATTTAatcaggagtttaggagcttctccaggtttctgctGATACCAGTGTAAGTAGTCACCAGATGAGTCCTTGTACACTGCCTGACTGGTTCTACAGTTGATGGTGACTGTTTCTCCTGGAAGAGcagatttcactgcaggagTCTGAGTTACTGTGGCTTGACCTCTGcattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578857.1 lncRNA upstream 8465 6813767 ~ 6815936 (+) False LOC117598166
XR_004578858.1 lncRNA upstream 9563 6813294 ~ 6814838 (+) True LOC117598166
TU170834 lncRNA upstream 140294 6628351 ~ 6684107 (+) True G144256
TU170785 lncRNA upstream 279485 6544372 ~ 6544916 (+) True G144221
XR_003404779.2 lncRNA upstream 395967 6422136 ~ 6428434 (+) True LOC113547099
TU171008 lncRNA downstream 20592 6932580 ~ 6933301 (+) True G144382
TU171002 lncRNA downstream 28713 6940701 ~ 6942295 (+) True G144376
TU171012 lncRNA downstream 39104 6951092 ~ 6951422 (+) True trnaw-cca_10
TU171074 lncRNA downstream 45649 6957637 ~ 6958164 (+) True G144442
TU171076 lncRNA downstream 46612 6958600 ~ 6961938 (+) True G144444
XM_026947362.2 mRNA upstream 90487 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 90487 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 144232 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 145075 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 230841 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 341332 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 341333 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 341333 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 470090 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 477511 7389499 ~ 7400424 (+) False LOC113529540
TU170969 other upstream 25497 6779989 ~ 6798904 (+) False G144353
LOC117598156 other upstream 25497 6796972 ~ 6798904 (+) True LOC117598156
LOC113547145 other upstream 38964 6783516 ~ 6785437 (+) True LOC113547145
TU170815 other upstream 230796 6587211 ~ 6593605 (+) True LOC113547098
TU170101 other upstream 1076457 5740958 ~ 5747944 (+) False gpx3
trnaw-cca_10 other downstream 39084 6951072 ~ 6951143 (+) False trnaw-cca_10
trnaw-cca_11 other downstream 40814 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_12 other downstream 44457 6956445 ~ 6956516 (+) True trnaw-cca_12
trnag-ccc_3 other downstream 313490 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaa-agc_3 other downstream 697053 7609041 ~ 7609113 (+) True trnaa-agc_3

Expression Profile