Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU170990 |
| length | 459 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 2 |
| gene id | LOC117598165 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 6871132 ~ 6899792 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU170960 | lncRNA | upstream | 42753 | 6783338 ~ 6830066 (+) | False | G144353 |
| TU170983 | lncRNA | upstream | 44816 | 6824401 ~ 6828003 (+) | True | G144361 |
| TU170981 | lncRNA | upstream | 45911 | 6807971 ~ 6826908 (+) | True | G144359 |
| XR_004578857.1 | lncRNA | upstream | 56883 | 6813767 ~ 6815936 (+) | False | LOC117598166 |
| XR_004578858.1 | lncRNA | upstream | 57981 | 6813294 ~ 6814838 (+) | True | LOC117598166 |
| TU171008 | lncRNA | downstream | 32788 | 6932580 ~ 6933301 (+) | True | G144382 |
| TU171002 | lncRNA | downstream | 40909 | 6940701 ~ 6942295 (+) | True | G144376 |
| TU171012 | lncRNA | downstream | 51300 | 6951092 ~ 6951422 (+) | True | trnaw-cca_10 |
| TU171074 | lncRNA | downstream | 57845 | 6957637 ~ 6958164 (+) | True | G144442 |
| TU171076 | lncRNA | downstream | 58808 | 6958600 ~ 6961938 (+) | True | G144444 |
| XM_026947362.2 | mRNA | upstream | 138905 | 6692793 ~ 6733914 (+) | False | LOC113547131 |
| XM_026947363.2 | mRNA | upstream | 138905 | 6698312 ~ 6733914 (+) | True | LOC113547131 |
| XM_034307439.1 | mRNA | upstream | 192650 | 6679484 ~ 6680169 (+) | True | LOC117598051 |
| XM_026947355.2 | mRNA | upstream | 193493 | 6605821 ~ 6679326 (+) | True | LOC113547127 |
| XM_026947313.2 | mRNA | upstream | 279259 | 6587367 ~ 6593560 (+) | False | LOC113547098 |
| XM_034307653.1 | mRNA | downstream | 353528 | 7253320 ~ 7264696 (+) | False | LOC113529730 |
| XM_034307652.1 | mRNA | downstream | 353529 | 7253321 ~ 7264696 (+) | True | LOC113529730 |
| XM_034307651.1 | mRNA | downstream | 353529 | 7253321 ~ 7264696 (+) | False | LOC113529730 |
| XM_026918781.2 | mRNA | downstream | 482286 | 7382078 ~ 7400425 (+) | True | LOC113529540 |
| XM_034307142.1 | mRNA | downstream | 489707 | 7389499 ~ 7400424 (+) | False | LOC113529540 |
| TU170968 | other | upstream | 2243 | 6862707 ~ 6870576 (+) | False | G144353 |
| LOC117598164 | other | upstream | 2316 | 6869259 ~ 6870503 (+) | True | LOC117598164 |
| TU170947 | other | upstream | 15963 | 6837804 ~ 6856856 (+) | False | G144353 |
| TU170958 | other | downstream | 6761 | 6906553 ~ 6908667 (+) | False | G144353 |
| LOC117598150 | other | downstream | 7397 | 6907189 ~ 6908576 (+) | True | LOC117598150 |
| trnaw-cca_10 | other | downstream | 51280 | 6951072 ~ 6951143 (+) | False | trnaw-cca_10 |
| trnaw-cca_11 | other | downstream | 53010 | 6952802 ~ 6952873 (+) | True | trnaw-cca_11 |
| trnaw-cca_12 | other | downstream | 56653 | 6956445 ~ 6956516 (+) | True | trnaw-cca_12 |
