RNA id: XR_004578856.1


Basic Information

Item Value
RNA id XR_004578856.1
length 2488
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC117598165
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6871132 ~ 6899792 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTGTTTAAAAAGATACACGTTGTGGAGCACTaatcttctttcttctctaaAGATGTTGCGTTGAACAAATAGGTGGAAATGGTGACAGAACTTACAAAGGAAGTAAAGAACCTCCGGGAGGAATTTCATGGTTTCCTCCAACAGTCCGTTTCAGTTTGGAGCCACCCTGCACTGCCTGTTCCTGTCTTGTTACCTCTGCATCCTGCATTTGGCACAGGCAAAGAAAGTGATGCTAACAATTTATTGAGCATTAGCTAGGTGTTTCAATAGAGAACATTTACAGTCTAAAATAACTTTAAGCTTGGGAACCCATATACGAGATGACGACATGACTTCAATTCTGTCTACCTTCGTATGAACCCCTATACCCTCTACCCCTTCTATATCTCGGTAGGTGAGACGCTTCACCATAATTGGAGGGACAACAGTGGAAATGTAGATCTACCGCATGCTTTCAGGTGCCCTGAATAAATGACCTATCACCATTAATAAATTGTCAGAAAGCTGGTGGAGCCGGCGTCGCCGTTGATGGTTGAGATCTGAGCTGGCTCATGCGGCGAACCATGTCCTGAGTGACGTTAGTTAAGTCCCTAAAGCAACGCTCATGGGTGGCACTCACAAACAGGGAACTCAATATCCACACGAACGGTATGAAACAGATTACAGAGTCCTGTAGCAGTGGAGGCAGCACTAATGGCTGACTCGCTAGTGGCAGCAGGGCAAATCTCCGTAGGCAGACATATCCAAAGGAGCAGGCAGAAATCCCAGTGCAACAGTTCCATATGTGACAGTATGAATGAGGTAAGTGGTGGTGATTGACACTTGTGATCACCAATCAGCGACGAGTGCTTCCTATTTTAGAGCGGGTTGGTTGCAGCCTGTCACGTCTGGATCCTCCCCTTTCTGTTTATTGATGGTGGTTTCAGCTTGTCTTTTCATCTGTGCGCGTGTCTCCTTCGGTTACTTCAGTAGTGGATTTGATGACTGCCCTCCTTTCAGgAGCTGGGGTCCCACGGGTGAAGGATCTtttgtggtggtggtgctgcTTCAACGTTTGCCGTGGGACACTTTTTggagtgtttgggtgtgtgatcTGAGTGCACGGTGGGGTGTGTGATCTGAGTGCACGGTGGGGGGTGTGATCTGAGTGCACGGTGGGGGGTGTGATCTGAGTGCACGGTGAGGGGTGTGATCTGAGTGCACGGTGGGGTGTATGGAAGTGTGCTTTTTGGATAATTAGCACTCGTAATGACTCCTGTGGGTAACCTCAGTCCTGGAAAttggtgtattttgtttttgtttattttgtgttgtgtaaacTGGTTTTTATGTAACGTGTTTTCTTGTggttctgttttattatttgaatCGGTTACCAGTCACTGTATCTTTAACAGTGAGGGTATTACTTCCTTTTTGTTGTAaggtttatttttgtgattttgtgtgaatttctgtcttatgtaatttgttttgtgtatttttgttattgaaCTGTCATTGGAGAGAGGTGCCAGGAGTGGCACCTGATCATTGAGGCtattttaagtgattttttttttattttgttgaattCATTGTGAacaaattttgtaattttatgaTACCTATGTTTCCTGCCTATCTTCTTATAAACGAAGCGAACCTGTGTGACCTAATTAATAAACCTTGGggtttatttctatttcctgGGTGAAAATCCCCCAGGTGGAGTAGTCGAGTTTTCTACAAGTAGACGAACTTGGGTTTGTGTGTTAAAACCTGTACCGCACCCCACCACACACATAATCCAAAAACCGACAGGCAGACAAACAATAACGCAGACTTAACTGAAATACCAAATACAGGCAGGGTCAAAACTGGGAAGACTAACATGGGAAACAGGGCAGGATAGCTGCTCAGGCATGCAACACACATGCTGGGTGAGGCCTTATATAGTGATGGAGATACAAAATGGCCACCGCAATAAGTGCTAGTCCCAAAATGGCCACCACCCCGGAAGTGCAAGTCATGACATAAATGGCCAGGGAAGAAGTTGAAAGACCAAGCAGAAGAAGGCATTCAAGGAAACAGGTGGTTGGAAGTGGTCTGCCATGTgacatattatttttcttttttctggtaTTACCCTGCTATTTTCTCTACTACATCACCCCTGTTGATACCCCACTCCCCAATCGCACACAATCACCACTACAACATGTGCACACCTCAGCTGAactgtacaaaacaaaattctATAATTAATGGGATAGTATAAAAATCTTAAATTTTTCCATACACCTTTTTCTGATCTGTTTTAGATGCACTGACTCAACAAATGGGAGCAGAAGCAGTTTCGGAGTACGCATATCCAAATGCTGTCCAGAAATGGCTCTGATACACTCCAGATCGTGCGGGTGGGACTGGACGACAGACAGCTGCACCGGTTCCTCCAGTGTCTCTGACAACCAActgattcttttttaaaatgtttaaacctGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170960 lncRNA upstream 41066 6783338 ~ 6830066 (+) False G144353
TU170983 lncRNA upstream 43129 6824401 ~ 6828003 (+) True G144361
TU170981 lncRNA upstream 44224 6807971 ~ 6826908 (+) True G144359
XR_004578857.1 lncRNA upstream 55196 6813767 ~ 6815936 (+) False LOC117598166
XR_004578858.1 lncRNA upstream 56294 6813294 ~ 6814838 (+) True LOC117598166
XR_004578860.1 lncRNA downstream 2133 6876226 ~ 6877268 (+) True LOC117598168
TU171008 lncRNA downstream 58487 6932580 ~ 6933301 (+) True G144382
TU171002 lncRNA downstream 66608 6940701 ~ 6942295 (+) True G144376
TU171012 lncRNA downstream 76999 6951092 ~ 6951422 (+) True trnaw-cca_10
TU171074 lncRNA downstream 83544 6957637 ~ 6958164 (+) True G144442
XM_026947362.2 mRNA upstream 137218 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 137218 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 190963 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 191806 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 277572 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 379227 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 379228 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 379228 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 507985 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 515406 7389499 ~ 7400424 (+) False LOC113529540
TU170957 other upstream 556 6796809 ~ 6870576 (+) True G144353
TU170950 other upstream 556 6810189 ~ 6870576 (+) False G144353
TU170968 other upstream 556 6862707 ~ 6870576 (+) False G144353
LOC117598164 other upstream 629 6869259 ~ 6870503 (+) True LOC117598164
TU170947 other upstream 14276 6837804 ~ 6856856 (+) False G144353
LOC113529731 other downstream 6564 6880657 ~ 6882164 (+) True LOC113529731
TU170951 other downstream 20483 6894576 ~ 6908667 (+) False G144353
TU170948 other downstream 21012 6895105 ~ 6919661 (+) False G144353
TU170958 other downstream 32460 6906553 ~ 6908667 (+) False G144353
LOC117598150 other downstream 33096 6907189 ~ 6908576 (+) True LOC117598150

Expression Profile