RNA id: TU171074


Basic Information

Item Value
RNA id TU171074
length 528
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G144442
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6957637 ~ 6958164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGATTTTAACTAGTGATCCAAAGACCCTTTATAAGTTCTTTgtgttgaaaaaacaaaacaacaacaacaacacaaaacaaactgaTTGGACTGAGTTTTCCATTTAGTACTGCCAATCAGCAAGTGCTGCTAACAAATTTAATCAATCaaatttttacacttttcattAATTGTACTGATTGTATTCATTGACGAGTTTTGACTAAaagtctataaataaataaactagtatTAAGTGATCAAATAGAGTCAAAATGTGCAAGACTGTCTTGCTTGTTTAAACCATTACTAGTTTTAACCAAATGCTTCCTGTCATATGTGAAACTGTTCCACcaggtagcagcagcagtattattttccatttctgaTTTAACTGCTGGTGAAATAGCCCTTTTCCCAGCCCTTTTGTGGCTTAAAGCAACCCTCACAAAGAGAGACacctaaataaaaactaaataaaaaaaaaataattccataAGTTTTAAAAGCACTGTTATCAGAAATATCCCTGATGTCAGAACCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171012 lncRNA upstream 6215 6951092 ~ 6951422 (+) True trnaw-cca_10
TU171002 lncRNA upstream 15342 6940701 ~ 6942295 (+) True G144376
TU171008 lncRNA upstream 24336 6932580 ~ 6933301 (+) True G144382
TU170990 lncRNA upstream 57845 6872819 ~ 6899792 (+) False LOC117598165
XR_004578860.1 lncRNA upstream 80369 6876226 ~ 6877268 (+) True LOC117598168
TU171076 lncRNA downstream 436 6958600 ~ 6961938 (+) True G144444
XR_003403117.2 lncRNA downstream 174686 7132850 ~ 7139372 (+) True LOC113530161
XR_004578812.1 lncRNA downstream 174686 7132850 ~ 7136715 (+) False LOC113530161
TU171111 lncRNA downstream 174686 7132850 ~ 7136915 (+) False LOC113530161
TU171130 lncRNA downstream 280839 7239003 ~ 7266915 (+) True G144486
XM_026947362.2 mRNA upstream 223723 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 223723 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 277468 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 278311 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 364077 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 295156 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 295157 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 295157 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 423914 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 431335 7389499 ~ 7400424 (+) False LOC113529540
trnaw-cca_12 other upstream 1121 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 4764 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 6494 6951072 ~ 6951143 (+) False trnaw-cca_10
TU170948 other upstream 37976 6895105 ~ 6919661 (+) False G144353
TU170951 other upstream 48970 6894576 ~ 6908667 (+) False G144353
trnag-ccc_3 other downstream 267314 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaa-agc_3 other downstream 650877 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 653606 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 656341 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 661773 7619937 ~ 7620009 (+) True trnaa-agc_6

Expression Profile