RNA id: XR_004578812.1


Basic Information

Item Value
RNA id XR_004578812.1
length 399
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC113530161
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7132850 ~ 7139372 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTGTCTTTCTTCTTGATTAGTGTCCTCGGTTTACGTTCTGAGAGTcctttatttcttcattaagCTTCTGTTATCATCTGTGTGCTTCATTCTGTGTTAAAGGCAACACACTCCATCTGGGATGATTTCGTCAGAAAGTTCTGGAAAGCAAGGCAGGCGTGCAAATAGCCAGGGGAGTGACACAAGGAAGGACAGAGGAAAAACTTGTGGCACAATGGTGATTTTCTCATCTATATCTAAATAATGAAgaaaaaccgAAGCAAATTCCTCCTCAACTCTGAGTTCGGCAAGTGACGTCAAGtcagcatggctgctcacagcatgaacagtaaacacagcagcacttcttacctttaaatgatttatactggatatacaagtatttgctgtGGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171076 lncRNA upstream 170912 6958600 ~ 6961938 (+) True G144444
TU171074 lncRNA upstream 174686 6957637 ~ 6958164 (+) True G144442
TU171012 lncRNA upstream 181428 6951092 ~ 6951422 (+) True trnaw-cca_10
TU171002 lncRNA upstream 190555 6940701 ~ 6942295 (+) True G144376
TU171008 lncRNA upstream 199549 6932580 ~ 6933301 (+) True G144382
TU171130 lncRNA downstream 102288 7239003 ~ 7266915 (+) True G144486
TU171170 lncRNA downstream 282046 7418761 ~ 7420820 (+) True G144523
TU171231 lncRNA downstream 311155 7447870 ~ 7448531 (+) False gabra6a
TU171240 lncRNA downstream 438393 7575108 ~ 7575491 (+) True G144568
TU171367 lncRNA downstream 439345 7576060 ~ 7576788 (+) True G144661
XM_026947362.2 mRNA upstream 398936 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 398936 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 452681 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 453524 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 539290 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 116605 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 116606 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 116606 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 245363 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 252784 7389499 ~ 7400424 (+) False LOC113529540
trnaw-cca_12 other upstream 176334 6956445 ~ 6956516 (+) True trnaw-cca_12
trnaw-cca_11 other upstream 179977 6952802 ~ 6952873 (+) True trnaw-cca_11
trnaw-cca_10 other upstream 181707 6951072 ~ 6951143 (+) False trnaw-cca_10
TU170958 other upstream 224183 6906553 ~ 6908667 (+) False G144353
trnag-ccc_3 other downstream 88763 7225478 ~ 7225548 (+) True trnag-ccc_3
trnaa-agc_3 other downstream 472326 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_4 other downstream 475055 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_5 other downstream 477790 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_6 other downstream 483222 7619937 ~ 7620009 (+) True trnaa-agc_6

Expression Profile