Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU171240 |
| length | 384 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G144568 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 7575108 ~ 7575491 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU171231 | lncRNA | upstream | 126577 | 7447870 ~ 7448531 (+) | False | gabra6a |
| TU171170 | lncRNA | upstream | 154288 | 7418761 ~ 7420820 (+) | True | G144523 |
| TU171130 | lncRNA | upstream | 308193 | 7239003 ~ 7266915 (+) | True | G144486 |
| XR_003403117.2 | lncRNA | upstream | 435736 | 7132850 ~ 7139372 (+) | True | LOC113530161 |
| TU171367 | lncRNA | downstream | 569 | 7576060 ~ 7576788 (+) | True | G144661 |
| TU171371 | lncRNA | downstream | 2637 | 7578128 ~ 7578377 (+) | True | G144665 |
| TU171439 | lncRNA | downstream | 110257 | 7685748 ~ 7688153 (+) | True | G144715 |
| TU171450 | lncRNA | downstream | 128590 | 7704081 ~ 7704763 (+) | True | G144726 |
| TU171516 | lncRNA | downstream | 440169 | 8015660 ~ 8018082 (+) | True | G144782 |
| XM_034307125.1 | mRNA | upstream | 879 | 7536335 ~ 7574229 (+) | False | atp10b |
| XM_026918736.2 | mRNA | upstream | 879 | 7537474 ~ 7574229 (+) | True | atp10b |
| XM_026919243.2 | mRNA | upstream | 49758 | 7467772 ~ 7525350 (+) | True | gabrb2a |
| XM_026919245.2 | mRNA | upstream | 51194 | 7467772 ~ 7523914 (+) | False | gabrb2a |
| XM_026919624.2 | mRNA | upstream | 108556 | 7447880 ~ 7466552 (+) | True | gabra6a |
| XM_026919168.2 | mRNA | downstream | 70837 | 7646328 ~ 7672282 (+) | False | atp7a |
| XM_026919167.2 | mRNA | downstream | 70853 | 7646344 ~ 7672282 (+) | True | atp7a |
| XM_026918884.2 | mRNA | downstream | 99050 | 7674541 ~ 7678733 (+) | True | sowahab |
| XM_026919694.2 | mRNA | downstream | 105095 | 7680586 ~ 7685537 (+) | True | gdf9 |
| XM_034307405.1 | mRNA | downstream | 213484 | 7788975 ~ 7797755 (+) | True | LOC113529727 |
| trnag-ccc_3 | other | upstream | 349560 | 7225478 ~ 7225548 (+) | True | trnag-ccc_3 |
| trnaw-cca_12 | other | upstream | 618592 | 6956445 ~ 6956516 (+) | True | trnaw-cca_12 |
| trnaw-cca_11 | other | upstream | 622235 | 6952802 ~ 6952873 (+) | True | trnaw-cca_11 |
| trnaw-cca_10 | other | upstream | 623965 | 6951072 ~ 6951143 (+) | False | trnaw-cca_10 |
| LOC117598150 | other | upstream | 666532 | 6907189 ~ 6908576 (+) | True | LOC117598150 |
| trnaa-agc_3 | other | downstream | 33550 | 7609041 ~ 7609113 (+) | True | trnaa-agc_3 |
| trnaa-agc_4 | other | downstream | 36279 | 7611770 ~ 7611842 (+) | True | trnaa-agc_4 |
| trnaa-agc_5 | other | downstream | 39014 | 7614505 ~ 7614577 (+) | True | trnaa-agc_5 |
| trnaa-agc_6 | other | downstream | 44446 | 7619937 ~ 7620009 (+) | True | trnaa-agc_6 |
| trnaa-agc_7 | other | downstream | 59007 | 7634498 ~ 7634570 (+) | True | trnaa-agc_7 |
