RNA id: TU171450


Basic Information

Item Value
RNA id TU171450
length 683
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G144726
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7704081 ~ 7704763 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgcaagattaacttgtaccagaatgatgggaagagaaaagtatggagaaggaaaggaagggctcatgatccaaagcataccacatcatctgtcaaacatgtggaggcaatgttatggcatgggcatgtttggctgccaatggaactgggtcactggggtttattgataatgtgactgttgatagaagtaacaggatgaattctgaagtgtacagagctgtactttctgctcagattcagtcaaatgctgcaaaactgataggacagcgcttcacagtacagatggataacaacccaaaacatactgtgaaagcagcccaagagcttggaaattaaatgttcttaaatggccgagtcagtcacctgacctcaacccaactgagctgcttttcacttactgaagacaaatctgaaggcagaatgacccacaaacaagcagcaactgaagatggctgcagtaaagacctggcaaatcatctcaagggaggaaactcagcatttggtgatgtccatggggtccagacttcaggtagtcattgactgcaaaggatttatctccaagtaataaaaataatcctaatatttatgattatattagtttgtcccattacttttgagcctgtgaaaatggaggaactctgtaaaaaatggctgtaattcctaaacggttaatgcaatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171439 lncRNA upstream 15928 7685748 ~ 7688153 (+) True G144715
TU171371 lncRNA upstream 125704 7578128 ~ 7578377 (+) True G144665
TU171367 lncRNA upstream 127293 7576060 ~ 7576788 (+) True G144661
TU171240 lncRNA upstream 128590 7575108 ~ 7575491 (+) True G144568
TU171231 lncRNA upstream 255550 7447870 ~ 7448531 (+) False gabra6a
TU171516 lncRNA downstream 310897 8015660 ~ 8018082 (+) True G144782
TU171518 lncRNA downstream 310897 8015660 ~ 8017911 (+) False G144782
TU171648 lncRNA downstream 338332 8043095 ~ 8043297 (+) True G144891
TU171660 lncRNA downstream 408898 8113661 ~ 8114545 (+) True G144903
TU171691 lncRNA downstream 504105 8208868 ~ 8213376 (+) True G144929
XM_026919694.2 mRNA upstream 18544 7680586 ~ 7685537 (+) True gdf9
XM_026918884.2 mRNA upstream 25348 7674541 ~ 7678733 (+) True sowahab
XM_026919168.2 mRNA upstream 31799 7646328 ~ 7672282 (+) False atp7a
XM_026919167.2 mRNA upstream 31799 7646344 ~ 7672282 (+) True atp7a
XM_026918736.2 mRNA upstream 129852 7537474 ~ 7574229 (+) True atp10b
XM_034307405.1 mRNA downstream 84212 7788975 ~ 7797755 (+) True LOC113529727
XM_026919983.2 mRNA downstream 110480 7815243 ~ 7832568 (+) True zgc:92242
XM_026919984.2 mRNA downstream 110499 7815262 ~ 7832568 (+) False zgc:92242
XM_034307627.1 mRNA downstream 110507 7815270 ~ 7832568 (+) False zgc:92242
XM_034307548.1 mRNA downstream 217463 7922226 ~ 7976013 (+) False ppp3cb
trnaa-agc_7 other upstream 69511 7634498 ~ 7634570 (+) True trnaa-agc_7
trnaa-agc_6 other upstream 84072 7619937 ~ 7620009 (+) True trnaa-agc_6
trnaa-agc_5 other upstream 89504 7614505 ~ 7614577 (+) True trnaa-agc_5
trnaa-agc_4 other upstream 92239 7611770 ~ 7611842 (+) True trnaa-agc_4
trnaa-agc_3 other upstream 94968 7609041 ~ 7609113 (+) True trnaa-agc_3
trnaa-agc_8 other downstream 334836 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_10 other downstream 337472 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_11 other downstream 339575 8044338 ~ 8044410 (+) True trnaa-agc_11
TU172076 other downstream 1136713 8841476 ~ 8842266 (+) True G145233
TU173183 other downstream 2839112 10543875 ~ 10547792 (+) False si:ch73-233f7.1

Expression Profile