RNA id: TU172895


Basic Information

Item Value
RNA id TU172895
length 204
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G145950
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10103985 ~ 10104188 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttaaacaaccatggcagattacgtatcccatggtcgtggaaaagatgttactgaaggggaaaattgttggcctgcatcaagcaaagaaaacaactaaggagattgctgaaatcactggaactgggttatgaaatgtccagtgcattattaaagcctggaaggatagtggtgaaccgtcaactttacagcagaaatgtagtcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172779 lncRNA upstream 190154 9907797 ~ 9913831 (+) True G145842
TU172774 lncRNA upstream 197162 9903017 ~ 9906823 (+) True G145841
TU172775 lncRNA upstream 199092 9903017 ~ 9904893 (+) False G145841
TU172777 lncRNA upstream 199092 9903017 ~ 9904893 (+) False G145841
TU172659 lncRNA upstream 276702 9793274 ~ 9827283 (+) True G145745
XR_004578825.1 lncRNA downstream 66527 10170715 ~ 10190193 (+) True LOC113530164
TU172913 lncRNA downstream 103816 10208004 ~ 10211495 (+) True G145966
TU173088 lncRNA downstream 346488 10450676 ~ 10451023 (+) True G146141
TU173117 lncRNA downstream 422355 10526543 ~ 10526858 (+) True G146168
TU173176 lncRNA downstream 450178 10554366 ~ 10595537 (+) False LOC113529865
XM_026919588.2 mRNA upstream 85052 9997288 ~ 10018933 (+) False bicc2
XM_026919587.2 mRNA upstream 85053 9997288 ~ 10018932 (+) True bicc2
XM_026919988.2 mRNA upstream 117570 9918102 ~ 9986415 (+) False ndst1a
XM_026919987.2 mRNA upstream 117570 9947306 ~ 9986415 (+) True ndst1a
XM_026918656.2 mRNA upstream 208641 9894150 ~ 9895344 (+) True slc35a4
XM_026920063.2 mRNA downstream 330759 10434947 ~ 10448212 (+) True etf1a
XM_034307524.1 mRNA downstream 331207 10435395 ~ 10448212 (+) False etf1a
XM_034307523.1 mRNA downstream 331231 10435419 ~ 10448212 (+) False etf1a
XM_034307431.1 mRNA downstream 348159 10452347 ~ 10471279 (+) False fbxw11a
XM_034307430.1 mRNA downstream 348169 10452357 ~ 10469710 (+) False fbxw11a
TU172076 other upstream 1261719 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 2059575 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 2061678 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 2064314 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_7 other upstream 2469415 7634498 ~ 7634570 (+) True trnaa-agc_7
TU173183 other downstream 439687 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_004578672.1 other downstream 1190940 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 1190940 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 2812731 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 3245138 13349326 ~ 13353253 (+) False zgc:172145

Expression Profile