RNA id: TU172913


Basic Information

Item Value
RNA id TU172913
length 3398
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G145966
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10208004 ~ 10211495 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGCATTAGTCGTATCTGCAATAGCATTAGCAGTActgttatctgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgttgtagggaTGATTACTGAATTAACAAGGCAATTCATTGGTGCAGTAGCAAACCAATTCATGGAGAGGTCGGAGGTTCATGCTGAAGCAGGACAGACACTGGACGGTGGTCAGTAATGGCAAACATCACTGCTTTCTGATGGACAATGAAGATGGCGACTGTACGGCTATTTAAAGTCAGGGTTCTCAAACCTTGTCTGCTAGGGACCCCTAATTTAACTATTAAATAAATCCCAAGTACCCAAGTGTTTCAAAGAATAGAGTATAATCCAACTTTTTAACTATTAGACTCATTCTTCAGATGTGTACAAAAactattttggctatttattgcaGCCATAGatgtttttattcctgaattttccaccaaaaacacattaggtccaagtttgCATTATTTAGAGACTACTTATTTTGAAGTTATtgagcattaaaataaatacattcaaaagtgGCCAGTCAAGCAGGAtgataagtaaaataaatataatgagcTCATGAGAAATTAGTAGGAAGTGTAACAAACGAGAGCAATATGGTTGGTTTCATTTGTTTGGTATCATAACTAACTTTAACCTTAATAACTTTGAACTGAACTGTGTTGGGCGAATTAGGAGTTACTGAGTGTGAGAGTTCAGCAAACTCTTTCTTTACCTCATTTTGACTGATTATCTTGAAGGTTTCTATTCAGTTATCCCAATAGACTCTACTCTCTTTAACTAAATAAGCAATGTCTCTATCCTGTGTGTAATACTACATAGAGTTGcatcaataaatatatgtatCTATAATACCAACTTAATAATGGGTTGTGATTTTCATCactgtaatgaattttttaaaaagaaattaccCTTGGTTATACCTTATTGGCCCCTGAGAGTCACCAAACCCCACTTTGCGAGCCACTGATTTACAGGCCAGACATGCAAACTGAATGACTAAAGTGTATTTTCATGTCAAAGATAGATAACGGTAGAGCATTATATATTCCCACatagatcatcatcatcatcatcatcatcgtttctccctctgtccctcACACATGCTGATAAATATCTCAGGGATGCATGTAAGTGTGGCTctgagagacaaagacaaatatACTGAATTGAATGCTGTGATGTAATCACTTCTGCTATCAGTAATGAAATGCGCTATAATCCGTCTCCTCACTGATCAGACTCCACAGAGGGACACGTCATTATGATTAAGCCCATATGACAACTTTAATCTGATTTATTAAATCTGGCACTCAGGTCTGAGTCTTAGAGCTTTAAAACATCCCCTTAAAACTGACACTACTATTTAATCACCAACTTTCTCACCTAGTCTCATGGTGTACATTTATACACGGATCTACCCCGAGTGTGATTTATCTCTGTATGAGAGAGGGGAGCAAAGACCTACTTCTAATAGGTTCTATTCAAAACTATGCAGGTTTTTTCCCGTTCTTTACACACCATGCTGACGATTGAGCACAGCGGGAGAAAACTGCATATACAAAATCCATTTTTCTTAAGAGActgtcaaaataaaatgttgccTGCTTCGAAAGTAAGTGGAAAAAAGTGTCACAGCCAGGTTAACAAAAGCACCCAGCTTGACACTGAAGGGGCCATGAAGAGTTTTTTTGTCCACAGCCATTATTTCTATTTCAGAATGAGAGCGCATTTAGTGGAATTGTGTGAAGGGCAGGCTTAAAAACTTGATGGTGCGTCACACACCAGCATTCATACACTGCTGGGGAATGTTCCTAACCTTTCTCTGACATAAGGAACTTTGAAAAAATATGAGAGCAAGAATGACTGAAAAAGAATAATTGcttaaatcaaacatttttactCATGTCAGAATTGGAGTGATGTAAGTTTTGGCTACTAATCGGTttggatacacacacagacacagacacagacacacacttctctgcttttccactGGACAGtgtagtatggtatggtatgctTACTAACCCGAATTCACAACTGTCTGCATCCTGCTTGAGTACCTGTGTCCATTTCCTTTAAAAGTACTTGGGAAAATAGAAGGAGTTGTCTAAAGGTTGTGGGTTGATGATGCCATTTCCCAAGCAACGCTAGTGCTAACATCTCACACTAATGATAACAGCAACAATGAAGGAGCTTCATGGTATGGTTTTTCAGTTACTCTAATGACATTTCAAcagtcaaaagtttgcaccATTTCTGGCTCCCAGTTGAGTGTTCTTGATGCCTTGGCAAGAAGGGTACCCAAATTCAGCACTTGTGTTTGTGGGATCATGGATTAGTTACAGTACCATGAGCTCACCGTACCACACTGTCCGGTGGAATAGAAACTTTTGTTAATAGAGATTTGTGGTAGCACTGTGGCGACCATCCAGCAACAGAACGAAGCAGAGCGTCAGCAAACAACAGCAgtatcacaaaataaaatgctcaTTGGCTTGTTATTAGCCaccagctgaaaaaaaacatcaccttcTTCTCGCCTCCACAGTGGGGAACATGCATAGGCCCGTCGAGTGTCTCACTAGAGCCTCCTAAAACACACCAGAACCTTTAATaattctcacacactcattggataatatttttacttaattttaataacattcTACACCACCTGAAGAACCTTCTAGAACTTCTAGGAGTCTCCTAGAAGGCTCAGGTGAGAGACTCTGGGATGGAGGGAGACATAGCGCCTCATCTGtctgaagagaaaaagaaatatttacagCCGCAGCTCTCAAATGGCTTCAGGAGCTCtatggatggaaaaaaaagagagaagaaagaaaaacaatacaatGAAAAGTtggtaatgaaaaaaaagagtgagagcaTGTGGTTGCCATTTCCAGATACAGAATGTGTTAATGCAGCTATgagagttttacattttttttatattgtttagtACAGCCAGAAAATAGGATacagacaaacaaagaaaaggaaaaaaattaaaaaagggaaaaaaagaatacagGTGATGCAGGTTATAGTTATTGATGGGTTTTTTTGAGATTCTGATCCAGATTGTGGGGTTGGAATGGCTTCAGAACTGTGCATTACAACCGGGGTCCCTGGTTGGCCAATGGGAGATGGGGGTGGAGCTACCAGATGTAGCCAATCTCATCTTCTTTGtcatcctcttcatcttcatcatcctctaTGGCCCCACGGGGACGGAGCCTGCCTCGCTTCTCCTTCTGTCTGCGCCGCCTGTTCTGTGGaggctcctcctcctcctcctggtCATCGAGAAGAATGACGGCTCCTCCACTGCCAAAATCCCCAGAGGTCTCTTGATCCt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578825.1 lncRNA upstream 17811 10170715 ~ 10190193 (+) True LOC113530164
TU172895 lncRNA upstream 103816 10103985 ~ 10104188 (+) True G145950
TU172779 lncRNA upstream 294173 9907797 ~ 9913831 (+) True G145842
TU172774 lncRNA upstream 301181 9903017 ~ 9906823 (+) True G145841
TU173088 lncRNA downstream 239181 10450676 ~ 10451023 (+) True G146141
TU173117 lncRNA downstream 315048 10526543 ~ 10526858 (+) True G146168
TU173176 lncRNA downstream 342871 10554366 ~ 10595537 (+) False LOC113529865
XR_003403072.2 lncRNA downstream 544414 10755909 ~ 10758807 (+) True LOC113529600
TU173320 lncRNA downstream 684246 10895741 ~ 10896384 (+) True G146322
XM_026919588.2 mRNA upstream 189071 9997288 ~ 10018933 (+) False bicc2
XM_026919587.2 mRNA upstream 189072 9997288 ~ 10018932 (+) True bicc2
XM_026919988.2 mRNA upstream 221589 9918102 ~ 9986415 (+) False ndst1a
XM_026919987.2 mRNA upstream 221589 9947306 ~ 9986415 (+) True ndst1a
XM_026918656.2 mRNA upstream 312660 9894150 ~ 9895344 (+) True slc35a4
XM_026920063.2 mRNA downstream 223452 10434947 ~ 10448212 (+) True etf1a
XM_034307524.1 mRNA downstream 223900 10435395 ~ 10448212 (+) False etf1a
XM_034307523.1 mRNA downstream 223924 10435419 ~ 10448212 (+) False etf1a
XM_034307431.1 mRNA downstream 240852 10452347 ~ 10471279 (+) False fbxw11a
XM_034307430.1 mRNA downstream 240862 10452357 ~ 10469710 (+) False fbxw11a
TU172076 other upstream 1365738 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 2163594 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 2165697 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 2168333 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_7 other upstream 2573434 7634498 ~ 7634570 (+) True trnaa-agc_7
TU173183 other downstream 332380 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_004578672.1 other downstream 1083633 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 1083633 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 2705424 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 3137831 13349326 ~ 13353253 (+) False zgc:172145

Expression Profile