RNA id: XM_026919421.2


Basic Information

Item Value
RNA id XM_026919421.2
length 5651
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC113529865
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10554366 ~ 10595601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAcaacacaattgttatttaggtccTGATAactaaaaacatgaaattgaaGTAGGaagtactttctttttcccacgACTGTAACTGAACCTGCAACTATATGGCCAAGTTTTACCATGTCTTTTTGATACAGTTGAGCATTATAATAGTTTAATATTTGACCTGGTGgagcaaattaaataaaaaaaataaaaataaaatatgtctGTGCACACTATTATACTTCCTATTCCACAAAGTTTTTCAAAAACTGATATTTAACCCCAGACATTATCAGACAGCAGCTTTATTACATTGAAAAACTGTAGTCAGTGTAagataatatttaatacataatgcattaatgcatttaCATAATTATGAGTAATGTGTATCTTAGAGTTAAATTAATAAGCCAATCAATTACAGTgcgtattttattttcattattaaaaaatgcattttgtataGGACCCTTTTGGCTTTCCATATTCACTGCTCCGCCTCGGATACATTTTGGTGTCTGATAGCGAGACCAAGAAACTTCGGGGGGTAAAACATCAGTCGTCATGTCAGTTCTGTAACATAAAAAGCAAGAACGCAGTCTCAGCTTCCTGGACCTCACGTTCTTTCATCTGTCGTTAGTTAGTTAATTTTATTCTCTTATTCTTTTCCGCGGAACTTTTTCCTCGAAAACCTCTTATCTTCTCAGGACATTCTTTGAATTTTCTGATGACGTAACACGCGGAGATGATGAAAATGGATGCCAGTAAGAATGTTAGTTCTTGGTTACGGGAcggtttgtttttctgtctgctgTCCGTTCTCTATACATCAGCGTTTACTGTCTTACGGTACTCGATTCCCGAAGAAATGGAAGAGGGGTCCGTAGTTGGAAATTGGGCAGCAGAATTGGGCCTGGATTTGAAAAAGCTCGGGGAACGTAAAATGCATTTGGACGTTGTAGCTAACAGGAAATACGTAGACGTTAACAAAGACACGGGTGAGATATACATTGTAGAGAGGATCGACAGAGAGCATTTGTGTACACCAGAATCGGTTATGACGTGTGTTCTGCAGCTGGATACCATAATAGAAAACCCTCTTGAACTTTTTGTCATTAAAATTGAGATAATGGATATTAACGACAATGCCCCCCATTTTAGAAGGGATGTTATGCACTTGGACATATCAGAGGCAACTAGCGTGGGGGAGAGGTTTTCCTTGAGTAATGCTGTGGATCCTGACACTGGAACAAATTCAGTTAAAACATACTATCTGAGTGAAAGTGATCATTTCAATATTGAGATCCAAACTGGTCAAGATGGATCCAAGTTTGCTGATTTGATTCTAAAAAAAGCTTTAGACAGAGAAGAGCAGACAGTTCATAATCTGATACTCACTGCTGTAGATGGCGGAGTCCCTGCACGCTCAGGAACAGCTAATATTATTGTTCGTGTGCTGGATACAAATGATAACTCCCCTCAGTTTGACAAAGAAAGTTACACCATAAATCTCATGGAAAACTCACCCACTGGAAGCcttgtaataaaattaaacgCAAGTGATAAAGATGATGGATCGAattcagaaattatttattctttcagtGTGTATACCTctgaaaaaacacagagaacattTAGTTTGAATCCAGAAAACGGAGAAATCAGAGTGAAAGAGATGATAAACTTTGAAGATTTCAAGATTTTTAACATGGAAATTATAGCAACTGATAAAGGAACAAATTCTTTAACAGGGCAATGTAAATTGACAATTTTAATAACAGATATGAATGACAATCATCCGGAAATTTCAGTAATGTCGTTTACTAGTCCTGTTAAAGAAGATGTCACTGTAGGTACAGTTATTGCAGTTGTTAGTGTGAATGATAAAGATTCAGGGGAAAATGGACAAATAGACATTCACATTTCTTATGAACTACCGTTTATGCTCAGAAACACATACAACTATTATGAGCTCGCAGTTTCAGAACCACTGGACCGTGAAAAGATTGCAGAATATGACATAACATTTACTGTCACTGACAAAGGAAACCCTCAATTATCTGATAATGAAACTTTAACTCTAGTACTGCTGGATGTTAATGACAATGTCCCACAATTTACAAAATCATATTATACCATACAAGTGATGGAAAATAACCCACCCGGGGCATTTCTGGGCTCCGTCAAGGCACATGATCCAGATCTCCATGAAAATCaacatattgtttattttataccagAAAAAGATATACTTATGTCCAGGCCGTCCGTGTCCATGTTCTTCTCGATTAATCCAGAGAACGGTAATCTTTACGCACTAAGGACATTTgattatgagagagagaaggaattTCTTTTCCATGTTGAGGCCAGAGATTCTGGTGTTCCTCCACTCAGCAGTAACGTGACCATTCACATTATTATCGTGGACCAGAATGACAACACTCCGGTTATAGTGTCTCCATGGCGCGCGCACGGCTCAGTGGTGGAGGAGAAAATACCGAGATCCACTGATAAAGAAACTCTGATAGCCAAAGTAATTGCTATAGATGCAGACTCTGTGCACAATTCCAGGATTACTTACCAATTTCTCCAGAACACTGATGCTACATTATTCAGTCTGGACCAGTACAATGGAGAGATCCGGACCACGAGAATGTTCAGTTACAGAGACTCACACCACCAGCGGCTGGTGGTTATCGCCAAGGATAACGGagatccctctctctctgctacaGTCACTATCAAACTGTCCACGGTGGAGACCGTGAATGAAACCTATGCTGACATGACTGAAGTGCCTTTAGATTATGACATCTTTTCAGATTTAGACCTGTATCTTGTGATCGGACTGGGCTCAGTGTCATTCCTGTTACTCATCACCATATTGGTGACAATCGTGATGAAGTGTCAGAAACCGAAGCCCAGTAAAGCTGCTCCTCCCTGTAGGAACAGTGTGATCAGTGAGAGGAGCTCTACCATTGCAGATTCCACCCTCGTCTCCAACAATGCCTCTTGGTACAATCTGTGTCTAGCAGGGAATAGAAAAGGAAAGCTGGTAGTTAGACAACCTGTGCCAAAGGGGACAAGATACACTGTGTCTAGTATACCGAGGAGCACAGGCCTGACTGAGACTAGTGACTTGGCCACATCTACTCTATAGGCCTCCACCACCACCAGTAGCAGTTCCTCGTGAGGCTTCATTCCACCTCCTGTTGCTCAAGTGATGCTGAGAAGAATCTGATCTACAAAAATGGAGCATCTAATTCCTGCCCACCTATTTTCTGATTTAGAACATGTGTCTCTACTTGGAGTCTTTCTAATTGCACCAGATGTACTTCCTCTTTGCTTTTCGTTTGCATTAATTCTTGAAATCTAACACAGCTGAATGGGAATTTTGTTATTTCTGGTTGTGACTGATGGATGTGCTTACCTAGTAAAGGATATTCCCACCCTCACTTTCACCCTTTTCAGAacagtcagtgtgtttattgCATTGGGCTCCATGCATGGATCTGCATGGCTATATCTACAGACGTTTGTTCACTTTATACGAATTTTTTGGACTTTTCACTGTTTGACACTTCAAAACATTCAAGTGAGCTTGGGGGAAGCCtaaaatgcacataaaatgAAGAACAACACAAAGAAGCACAAAGAAATGTGGATAAGGTCATAGGACCCTAAAATTGTGCAAGTGGTGATAACCTTGTAATGGACTTCTTCACCTTTTTTCTAATGGATGTCCaatcttttttgtgtttaatggATCCGTATCTAGGAAGGTAATATGACCAAAGGGAAAACTGAGaaacaccaccacaacaattgtcaattaaaaccattacagtaTAAATGGGAAATGAACTCTTTGTGCTGTTTACTCTGTGTGTTATACGATAGATGTATTGTTGGTTTTGCTGATTTTAACCtatgacaaaaaaatcacaataaattacacaaatctattttacacacacatttatataatttgtattgcatcaccaaaaaatatatattcattcatcagAAATGAGTTATTAGTCACTTGCTTTCCAACTGAATTTTAACCCATTTATTAGCTTTTTTGCCCTTTGCTCATATAGTATCCCAGCTCAAGTGGACTCTTTTAGGTTAATGGTTTTCATTCTACATGAGTAAAACCTATAATATACACATGCACCTATATCAATTtcatattgcatttattttagtcATAAATTTAGAACACGTTTagtgtaaataaacacattaacacatattAAACCGAATACAGTAGAAAGGCATATAGCTTGCATTGTTGTGACCATTCTGAATATGACCATTTAAACTATCTTCATACTATTCTATAGACTTTACTGCAATATTATAGTACTAAGTGAAAAAAGACAACTACAGCAAGGTTTTCATGTTTGATTTTATGGTGTTTggtttatgcaaattattttgtTTGCATTACAGTTTTGCTAAAAATCTATAGCTTTGTTATCCTGTTGAAAGGTTTTGAGCTGTTTTAGTTGTTTGAAACTGATTCAATGTTATTTTGTGATTTATGAcgttaaaggttttttttttttttttttttttttttggtaaagtgTTACAGTGGTGGTGCATTATTTAACTGGCTGTGTGTTAATCTATAATATGTACTGCATCATTTTCCTACTCTGTAGTTGTTCTAAATTCTCAGAAATCGCTTATTATTTGTGAATAACAATCAGAAAATTCTTACTAAAATATATGCAGGGTTCTGATGACTTCCCCAGGCAGGACAAACACACCAAGGGGTTATAAGGCCAGTATATTACAAGACATACTAACATGTGCAATTCATAGATAGAAAGGCATGAGAGGGTTTCAGTATGAActatcgagagagagagagagagagagagagagagagtgagagcgaaTATGCACTCTTTCTTCAACTCTCTTCAttgcagtgctgtgtgttggCATCAGATCTCATTCATAAAAACACATGGCCTCTGTTCAACCCCAGCTGGTTCTGCCTAGGAGGAATTTCACCAGATTCTGTCTAACCTCCTAACCTTAGTCTTCAGCTTTATTACTGTGTGTACAtcataataaacagaaaatatcaGTGGTCTGTTAATTTTTATGAAAAGGTAGATATACAAAATAGTATTCATTGTGATGATGCATTGAATTAgtgatgctttttttaattattacagctAATATAATGCAAGCGCTACAGGTACATAGGAAATAACCTGTATAACCTGTGTGTAGTTTAAATCAGAACATGAGCATTTGATTTTGACAGCCTGGATTTCCATAGTATTGTGTATCAATAAAGTAAGTAACTGAAAGTAATGATAATGACACATCAGTACATCTGACAACATAAAAAGACAAGTGTTCTGTATTTCTGCTGCATGATAcaatgctgtgttttttgtatgtgtatttCCTGGGTGggtgattaaaatgattaatctATAAAAATCACAGTGAGCTGACTCACCAATGTTTACCTTCTTTTGAttacttgtatttttattatgcaCATAAGTAATTGCACATTTAACTTGTAAGCTTGGTTTATATGAACATTTAGAGCTGTGCTACTAACTGTATTGCATAACTCTCTTTTCCTGTAATTgcaaaagtgtaaataaaatccTTGAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173117 lncRNA upstream 57695 10526543 ~ 10526858 (+) True G146168
TU173088 lncRNA upstream 133530 10450676 ~ 10451023 (+) True G146141
TU172913 lncRNA upstream 373058 10208004 ~ 10211495 (+) True G145966
XR_004578825.1 lncRNA upstream 394360 10170715 ~ 10190193 (+) True LOC113530164
TU172895 lncRNA upstream 480365 10103985 ~ 10104188 (+) True G145950
XR_003403072.2 lncRNA downstream 160308 10755909 ~ 10758807 (+) True LOC113529600
TU173320 lncRNA downstream 300140 10895741 ~ 10896384 (+) True G146322
TU173306 lncRNA downstream 420494 11016095 ~ 11017354 (+) True G146308
TU173380 lncRNA downstream 455615 11051216 ~ 11051420 (+) True G146377
TU173383 lncRNA downstream 457566 11053167 ~ 11053425 (+) True G146380
XM_034307265.1 mRNA upstream 8497 10573619 ~ 10576056 (+) True LOC117598003
XM_034307264.1 mRNA upstream 11457 10567553 ~ 10573096 (+) True LOC117598002
XM_034307409.1 mRNA upstream 17454 10562063 ~ 10567099 (+) True LOC117598040
XM_034307267.1 mRNA upstream 24387 10558330 ~ 10560166 (+) True LOC117598004
XM_034307266.1 mRNA upstream 26727 10555300 ~ 10557826 (+) True pcdhb
XM_034307410.1 mRNA downstream 1577 10597178 ~ 10599659 (+) True LOC117598041
XM_026919429.2 mRNA downstream 4874 10600475 ~ 10607529 (+) True LOC113529867
XM_034307411.1 mRNA downstream 11819 10607420 ~ 10609896 (+) True LOC117598042
XM_034307412.1 mRNA downstream 16296 10611897 ~ 10617253 (+) True LOC117598043
XM_034307617.1 mRNA downstream 22869 10618470 ~ 10623013 (+) True LOC117595700
TU173183 other upstream 36761 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 1742287 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 2540143 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 2542246 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 2544882 8039599 ~ 8039671 (+) True trnaa-agc_8
XR_004578672.1 other downstream 699527 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 699527 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 2321318 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 2753725 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 3165733 13761334 ~ 13775183 (+) False ces2b

Expression Profile