RNA id: TU173183


Basic Information

Item Value
RNA id TU173183
length 2271
RNA type TUCP
GC content 0.40
exon number 3
gene id si:ch73-233f7.1
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10537251 ~ 10547929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATCACGGGTTCAGAGGGAATTAACAGCGCGCGGAATCAGTCCGTTTTAACTCGGAACAAACACGAGCGGCTTTGCTCTCCCTCCCCGCTGCGCCTCGGCCCACGAAAACGGTACAAGACATGAGCGTGTGGACTTGAATTTAGTTCACTCTCAAAGAAATCCAATCATTCAAACATTTGGCCACAAGATGGCAGTCGTAAGTCGCACACCTGATAGTCAAACAAGGAAATGTTGGGTATTGGTTCAAATCAGTTAAATTTGCTTATTTGGGTGACGCTTTGAAACGATTTACAACTGAGACAGGACACAGCTGAAGAGATTAGCGTTAAAGGCCTTTAAGGACCCAAccgtggcagcttggtggtgcaaTTACAGTTTGTAATTTGCAATtacaaccttccgatcagtagccaaaagccttaaccactttagtttgttttctgaatttcttcATCCAGAAACGAATATGAATCTAAATATTTGTTATTGCTAGTAAATTGTATTTTGTGTTGCAGTTAAAACAAGACAATACTAACTGGGCTCTTACCAAGAACCAAACTTCAACTTTGAAAAgTTATAACTCAATTAATATGGATGGCACCCTCATGAGGAAGGTCATGCAGACTGATTCTGAAAACTATGTAAGTCCAGTGGCTGCAGGACAGTACTGGACGTGGGGAACACGAATGAGAGAGTGCAAGATGTCTTCCCCTGTGACGGGCCTCCCTGAGCGGGCATGGACACCCCGCTACACCCCAACAAAAACTCCCCAACAGCAGCAGCCTTCAGGTCAGTCACATGGTCATCCTCCACCTGACTACCAACATAATGTCTACATCCCTGGGACTCCATCTGCCCTCTGTACTCTCCGGCCCAGTAATCGCAGTGAGCTGGATGTCCACAACACTTTCTCCACCTTTGGCAAGAAGCGCAAGTTCATCTCTCCCAGCAGTTATGACCTAAGGGATGAAACAGGTACTGAGGTCATCAATAATGACCTGTATAATGAATAGTGAAGAAGATTGGAGAGAGACTGCAACAGCATGCCAGATGATGGACAGAACATGTGGAGGGGAAGCAAATGTGGTGAAAGGAAAAAGCAGTGAAGCAGAGAAGAACCTAGAAGACCAGACATATTAATTGCAACCAAAGCAGAGCCTATTTATCCAAACCATACTGCTCTAATTTTACAGCTCCATTATGTTCCTGAACAGGGTGGTATACTTCCCATGACCCAATGTGCCCTTAGAGACACTTTTGGTTTATGTCTGtcatgtttgtatgtttgtggcACATAAAGCATGAGCCAGAATAAGAAAGCTTTAACCTCCAGTAGGGATTGGAAGAACTGGCTTAGTGTCAGAGATTAACATCTAACAGTTAAGGCCATCTAGATGAACCTGAACATAGAATGATAAATTAAGGAAGGTGGGAGGTCTGGTTACCATTTGTGCAATGTTTCACATATCTATGTCAGTtctccagtttttttttgcaaaaacatgATGGTAGGTGAATTGCCTAGTCTAAGATTTAAAAATGCCTCTATAAATAttcctaggtgtaaatgagtgttcCAGTATAAAAGCTCTAGATCTaccatgatcctgaccagaGAAAAGTGGTTACCCTGAGTAAGGATGAATGAgcgaatgaataaatgaaattaagaaAGGAAAATTGaagttataattttttattatacaacATGTTGATAGTGAACAGACTAATGATTTGGTTTACACTGAttacactcttaggaaaaaaaaaacctaaaggattctttgtttatttatgaaagGTTCTATGCAGACCCTTACAACCTCATTGTTCCAATCAGAAAGGGCTCCAAGCAGAACTAATGGAAGCTAAGAAACTTTGAAGAGCTCAACAAAGTATCCTTAATGAACTTATGAGGGggtctttttttctaagagtgtagttTATTCTTCTGTGTGAATAATGGGCTGAGGAATCACTTACTACTGTTTTGTTAGGACAACTTGGTGCATAGTTCAAAGATATGAAGGTCAATGGTAACAAACAGCAACAGTGAATCACATTGACTCcatgccattattattattattattattattattattatgctacaATTTTTGACAATCATATTAGGTAAACTGTGAGCATTACATATCCTTTGGCCACAGTGTGAATTTTCTGTCTTAGCAGAATCATCAGGCCATAGCCTTGCATTGATTGGTTGCTCAGTTAAAGAGGTGAATCAGTCTAACATGGTTATTGTTCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173117 lncRNA upstream 17017 10526543 ~ 10526858 (+) True G146168
TU173088 lncRNA upstream 92852 10450676 ~ 10451023 (+) True G146141
TU172913 lncRNA upstream 332380 10208004 ~ 10211495 (+) True G145966
XR_004578825.1 lncRNA upstream 353682 10170715 ~ 10190193 (+) True LOC113530164
TU172895 lncRNA upstream 439687 10103985 ~ 10104188 (+) True G145950
TU173176 lncRNA downstream 6574 10554366 ~ 10595537 (+) False LOC113529865
XR_003403072.2 lncRNA downstream 208117 10755909 ~ 10758807 (+) True LOC113529600
TU173320 lncRNA downstream 347949 10895741 ~ 10896384 (+) True G146322
TU173306 lncRNA downstream 468303 11016095 ~ 11017354 (+) True G146308
TU173380 lncRNA downstream 503424 11051216 ~ 11051420 (+) True G146377
XM_026919533.2 mRNA upstream 17965 10508813 ~ 10525910 (+) True fgf18a
XM_034307268.1 mRNA upstream 17965 10510456 ~ 10525910 (+) False fgf18a
XM_034307431.1 mRNA upstream 72596 10452347 ~ 10471279 (+) False fbxw11a
XM_034307429.1 mRNA upstream 72596 10452359 ~ 10471279 (+) True fbxw11a
XM_034307432.1 mRNA upstream 72596 10452417 ~ 10471279 (+) False fbxw11a
XM_034307266.1 mRNA downstream 7508 10555300 ~ 10557826 (+) True pcdhb
XM_034307267.1 mRNA downstream 10538 10558330 ~ 10560166 (+) True LOC117598004
XM_034307409.1 mRNA downstream 14271 10562063 ~ 10567099 (+) True LOC117598040
XM_034307264.1 mRNA downstream 19761 10567553 ~ 10573096 (+) True LOC117598002
XM_034307265.1 mRNA downstream 25827 10573619 ~ 10576056 (+) True LOC117598003
TU172076 other upstream 1701609 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 2499465 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 2501568 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 2504204 8039599 ~ 8039671 (+) True trnaa-agc_8
trnaa-agc_7 other upstream 2909305 7634498 ~ 7634570 (+) True trnaa-agc_7
XR_004578672.1 other downstream 747336 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 747336 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 2369127 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 2801534 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 3213542 13761334 ~ 13775183 (+) False ces2b

Expression Profile