RNA id: TU173320


Basic Information

Item Value
RNA id TU173320
length 313
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G146322
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10895741 ~ 10896384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAACATGTTCTTAAAGTTGTTGAGGTCTCCGAATAGCTCCTCGGGGCTGATCTTCTTGGGGTCAAACACAAAGTATTTGCCTAGGTCTTCATACTGCTTCTCCATGTTGATGTGCATCAGCTGGAGCTTCTCAAAATGCTCTCGCGCAGACGCCACAaaacTAGTCATTTTCTCGACAAACTTGTCCTTTTCATTTTGGGGAGGAGGGAAAGTCTCGATGTCCTTTTCCAGATCCTTGATCTGCTTCCCCATCTGATCCAGATTTTTCTGGAGTGTCTCTGCTGAGACTACAAGAAAAGGAGAGACCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403072.2 lncRNA upstream 136934 10755909 ~ 10758807 (+) True LOC113529600
TU173176 lncRNA upstream 300204 10554366 ~ 10595537 (+) False LOC113529865
TU173117 lncRNA upstream 368883 10526543 ~ 10526858 (+) True G146168
TU173088 lncRNA upstream 444718 10450676 ~ 10451023 (+) True G146141
TU172913 lncRNA upstream 684246 10208004 ~ 10211495 (+) True G145966
TU173306 lncRNA downstream 119711 11016095 ~ 11017354 (+) True G146308
TU173380 lncRNA downstream 154832 11051216 ~ 11051420 (+) True G146377
TU173383 lncRNA downstream 156783 11053167 ~ 11053425 (+) True G146380
TU173544 lncRNA downstream 325197 11221581 ~ 11293483 (+) True G146513
TU173609 lncRNA downstream 520794 11417178 ~ 11417389 (+) True G146576
XM_034307081.1 mRNA upstream 61217 10832104 ~ 10834524 (+) True LOC117597888
XM_034307080.1 mRNA upstream 68355 10825470 ~ 10827386 (+) True LOC117597887
XM_034307120.1 mRNA upstream 82619 10811938 ~ 10813122 (+) True LOC117597912
XM_034307079.1 mRNA upstream 84546 10804439 ~ 10811195 (+) True LOC117597886
XM_034307121.1 mRNA upstream 91302 10803659 ~ 10804439 (+) True LOC117597913
XM_026918809.2 mRNA downstream 302482 11198866 ~ 11227888 (+) True LOC113529553
XM_026918810.2 mRNA downstream 302482 11198866 ~ 11227888 (+) False LOC113529553
XM_026919619.2 mRNA downstream 398744 11295128 ~ 11306318 (+) True hrh2a
XM_026919618.2 mRNA downstream 398744 11295128 ~ 11304023 (+) False hrh2a
XM_026918811.2 mRNA downstream 427973 11324357 ~ 11335757 (+) True LOC113529554
TU173183 other upstream 347949 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 2053475 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 2851331 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 2853434 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 2856070 8039599 ~ 8039671 (+) True trnaa-agc_8
XR_004578672.1 other downstream 398744 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 398744 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 2020535 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 2452942 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 2864950 13761334 ~ 13775183 (+) False ces2b

Expression Profile