RNA id: TU173380


Basic Information

Item Value
RNA id TU173380
length 205
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G146377
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11051216 ~ 11051420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAAATAAGAGTGCATTTGTGTATTGGTGATGTGTGAGAAATATTTTGTTTGATGTGTGAGAAATATTAAGTTGCTAGAGGACAAAAACTTGTATgcaataattaatattacttAATGTTAGGTTAGGACAAAAATATGGTTAggtttgacaaaaaaaacaagtgaattagttttattgtgcatttcatttttttagttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173306 lncRNA upstream 33862 11016095 ~ 11017354 (+) True G146308
TU173320 lncRNA upstream 154832 10895741 ~ 10896384 (+) True G146322
XR_003403072.2 lncRNA upstream 292409 10755909 ~ 10758807 (+) True LOC113529600
TU173176 lncRNA upstream 455679 10554366 ~ 10595537 (+) False LOC113529865
TU173117 lncRNA upstream 524358 10526543 ~ 10526858 (+) True G146168
TU173383 lncRNA downstream 1747 11053167 ~ 11053425 (+) True G146380
TU173544 lncRNA downstream 170161 11221581 ~ 11293483 (+) True G146513
TU173609 lncRNA downstream 365758 11417178 ~ 11417389 (+) True G146576
TU173606 lncRNA downstream 390110 11441530 ~ 11443247 (+) True G146573
TU173699 lncRNA downstream 466902 11518322 ~ 11579432 (+) True G146645
XM_034307081.1 mRNA upstream 216692 10832104 ~ 10834524 (+) True LOC117597888
XM_034307080.1 mRNA upstream 223830 10825470 ~ 10827386 (+) True LOC117597887
XM_034307120.1 mRNA upstream 238094 10811938 ~ 10813122 (+) True LOC117597912
XM_034307079.1 mRNA upstream 240021 10804439 ~ 10811195 (+) True LOC117597886
XM_034307121.1 mRNA upstream 246777 10803659 ~ 10804439 (+) True LOC117597913
XM_026918809.2 mRNA downstream 147446 11198866 ~ 11227888 (+) True LOC113529553
XM_026918810.2 mRNA downstream 147446 11198866 ~ 11227888 (+) False LOC113529553
XM_026919619.2 mRNA downstream 243708 11295128 ~ 11306318 (+) True hrh2a
XM_026919618.2 mRNA downstream 243708 11295128 ~ 11304023 (+) False hrh2a
XM_026918811.2 mRNA downstream 272937 11324357 ~ 11335757 (+) True LOC113529554
TU173183 other upstream 503424 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 2208950 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 3006806 8044338 ~ 8044410 (+) True trnaa-agc_11
trnaa-agc_10 other upstream 3008909 8042235 ~ 8042307 (+) True trnaa-agc_10
trnaa-agc_8 other upstream 3011545 8039599 ~ 8039671 (+) True trnaa-agc_8
XR_004578672.1 other downstream 243708 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other downstream 243708 11295128 ~ 11303946 (+) False hrh2a
TU174750 other downstream 1865499 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 2297906 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 2709914 13761334 ~ 13775183 (+) False ces2b

Expression Profile