RNA id: TU173750


Basic Information

Item Value
RNA id TU173750
length 1695
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G146687
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11670762 ~ 11674491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttcagatttttttgctttgatGCCAAACACATTCTAGTTTTTGGATTATATTTGAGGTGCAAAACTGgtgtaattgtttttcttccccCTCAAACATTCTTTTAAACAGTCAGATGTGTGAATATATAGGGACATAAAGAATATTTGCATAGTGAGATTCCTTATCAGAATGTGTCCTTTATCAGAGGGACATCACCTTATctcactaaacacacaaacttgTTTTCCCCTTGCGTAATTAAAGGGGGTGTTTAGTGTCTATGTGTGATAATGGCAGTGATGTAAATTGGAAAGCGGTTTTGAAATGACAAAGTGCTTTTAAACCATTCTCCCAAGTTATTCATTAGCCATCGCAGAGTTATTAATGTCGTCTAATGATGGATCGTTAACTTAAGGCATATTAGTCATGCAGAATATCACACACTCTTCAAATGAACAAACTGCCtgcattaaaaagaaagaaacaggagCTTGTATTAGGAAGCAAGCATTTACTGTTTTAAGTGTGTTAAATACACTATGTGATACATTTCTATAGGGTTTGTGTCTGGACATGGACGTGGATATGATGCAGCACAGAAACATAATCTGTATCTTAGCATCCGTCCCTGAGGTTCCCCCATACCACACCCAGTCTTAGAACCATATATGCAATACATAGGCTTTATTATATGTTTAGCAGAAGCGATAAGCATTTAGGTTTCCACAGAAGCTTTAGTAGCCCACTCCTCTACAGAAAGAATGTAATCCATATGAGTATCCATCTGTACAGGTCACCTCTTGTGTTCTGCCACTTTTAGTGCCAAAGGCTCAAAAACACCCTTCAGGCTTCATGTTTATTCTGTATGGCAAGCTGTGTGGAAGGCAAAATGGAGAGatcataaaggaaaaaaaacgtaTTTAATAATCGGAAAATGTCGTCTGTCACCATTCGTGTTTTCTCAAATTAACaattcttattcttttttttttaaaagctggaGCCCTCTTTTAAGACACATCGATCCATAATATTTCAGACTTAGCTACAGAAGTTCTTATAAGCGAGGTCTAAAGGGCTCTCTATCAGTACTATCAGTACTATCAGTACCGTTTCCTCTCTTTCAGCTACTCAGTGaagaaataataacaatcaCGTTTTGATATTGAGATTTGatatctcatttttattaaaatgtctcctttttggaataaaaaaacaacttggTAGACAGGGGATGAAGTGGTAAATATGAGGTCTTCTAGCTGCTCATTCTGTGTGTCTACTTTCACACGGGTAAAATGCCAAAACCAGCTTGACCAAATCTCGTTTTATTTGGTTCTCAACGTTATTACACATCTTGTTCTGTGTTAAAGACTACAGTCTCGCATCAGATCTCTTGCCTGTAATGTGTTTTATCCTTTCACTCTGGATGAGCTTACTTTTATTGATGTcttataatgtgaaatatttcagtatgtaATGAAGAAATGTTATGCTTTACTCTTTCTAAAGCACAGGTTCTGCTTATTTGTATCTTGTCCTTATTTTTTAGGTCTTTTTGACCTAGTCCTGTTGATTGGTTCATGAGCAATTCACACCTTACTACAGCTTTCTCATTTCTGTGttaattaattgtattaattaCTGGATGAAATCATGAAACCAGGCCAGCAATTCACCGTGAATAATCCAAAATGGAACAAgcacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173740 lncRNA upstream 72797 11595516 ~ 11597965 (+) False atp6v0e1
TU173699 lncRNA upstream 91330 11518322 ~ 11579432 (+) True G146645
TU173606 lncRNA upstream 227515 11441530 ~ 11443247 (+) True G146573
TU173609 lncRNA upstream 253373 11417178 ~ 11417389 (+) True G146576
TU173544 lncRNA upstream 377279 11221581 ~ 11293483 (+) True G146513
TU173755 lncRNA downstream 538 11672994 ~ 11674373 (+) False G146687
TU173749 lncRNA downstream 871 11673327 ~ 11674491 (+) False G146687
TU173756 lncRNA downstream 871 11673327 ~ 11674373 (+) False G146687
TU173827 lncRNA downstream 55570 11728026 ~ 11728681 (+) True G146741
TU173854 lncRNA downstream 128621 11801077 ~ 11830797 (+) True G146765
XM_026918780.2 mRNA upstream 1163 11631622 ~ 11669599 (+) False LOC113529539
XM_034307602.1 mRNA upstream 1163 11633261 ~ 11669599 (+) True LOC113529539
XM_034307314.1 mRNA upstream 54118 11602447 ~ 11616644 (+) True LOC113529641
XM_026918972.2 mRNA upstream 72792 11595499 ~ 11597970 (+) True atp6v0e1
XM_026918970.2 mRNA upstream 76974 11589041 ~ 11593788 (+) False rpl26
XM_026918598.2 mRNA downstream 200440 11872896 ~ 11880458 (+) True smu1a
XM_026918748.2 mRNA downstream 231237 11903693 ~ 11924459 (+) True tbc1d2
XM_026919978.2 mRNA downstream 291681 11964137 ~ 11997179 (+) True abca1b
XM_026919570.2 mRNA downstream 333814 12006270 ~ 12011510 (+) True thg1l
XM_026918699.2 mRNA downstream 391961 12064417 ~ 12070764 (+) True irf7
XR_004578672.1 other upstream 364444 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 366816 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 1122970 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 2828496 8841476 ~ 8842266 (+) True G145233
trnaa-agc_11 other upstream 3626352 8044338 ~ 8044410 (+) True trnaa-agc_11
TU174750 other downstream 1244463 12916919 ~ 12917254 (+) True G147542
TU175114 other downstream 1676870 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 2088878 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 2148134 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 4135534 15807990 ~ 15822591 (+) False LOC113529564

Expression Profile