RNA id: TU174857


Basic Information

Item Value
RNA id TU174857
length 215
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G147630
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13164576 ~ 13164790 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTACTTCTCACCTCTGCATTTTGGTTCTTCTTTATATAGGTCTTCTATATCAAGAGTCTCCACTGAAAGGAAAGATGAAGTAAATATGTGGCAAACGGCCCTATTATACTGGTGAAGGCCACATAATGCCAGTACTGAGGTCATACTgagaccaaacacacacatacaaacagtaCAGTGAGAGCTGGAGGTCAAGGTGATACCCAGCAGTGAG

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174766 lncRNA upstream 66162 12994188 ~ 13098414 (+) True G147557
TU174826 lncRNA upstream 74071 13070255 ~ 13090505 (+) True G147602
TU174803 lncRNA upstream 90768 12969147 ~ 13073808 (+) True G147582
TU174771 lncRNA upstream 147719 13014961 ~ 13016857 (+) True G147559
TU174783 lncRNA upstream 149380 12995733 ~ 13015196 (+) True G147562
TU174869 lncRNA downstream 22901 13187691 ~ 13188284 (+) True G147641
XR_004578665.1 lncRNA downstream 164852 13329642 ~ 13333044 (+) True LOC117597924
TU175059 lncRNA downstream 195245 13360035 ~ 13371776 (+) True G147784
TU175060 lncRNA downstream 195245 13360035 ~ 13371776 (+) False G147784
TU175061 lncRNA downstream 195245 13360035 ~ 13371776 (+) False G147784
XM_026919270.2 mRNA upstream 2647 13123143 ~ 13161929 (+) False dusp8a
XM_026919271.2 mRNA upstream 2647 13126486 ~ 13161929 (+) False dusp8a
XM_026919272.2 mRNA upstream 2647 13151746 ~ 13161929 (+) True dusp8a
XM_026919520.2 mRNA upstream 301021 12862501 ~ 12863555 (+) True phlda2
XM_026919392.2 mRNA upstream 314183 12837011 ~ 12850393 (+) False nap1l4a
XM_026919079.2 mRNA downstream 5905 13170695 ~ 13215991 (+) True mob2a
XM_026919076.2 mRNA downstream 24894 13189684 ~ 13215991 (+) False mob2a
XM_026919078.2 mRNA downstream 27835 13192625 ~ 13215991 (+) False mob2a
XM_026919077.2 mRNA downstream 40487 13205277 ~ 13215991 (+) False mob2a
XM_026918818.2 mRNA downstream 184533 13349323 ~ 13353262 (+) True zgc:172145
TU174750 other upstream 247322 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 1858258 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 1860630 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2616784 10543875 ~ 10547792 (+) False si:ch73-233f7.1
TU172076 other upstream 4322310 8841476 ~ 8842266 (+) True G145233
TU175114 other downstream 184536 13349326 ~ 13353253 (+) False zgc:172145
XR_003403080.2 other downstream 596544 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 655800 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2643200 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2643200 15807990 ~ 15820156 (+) False LOC113529564

Expression Profile