RNA id: TU175078


Basic Information

Item Value
RNA id TU175078
length 4145
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id G147785
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13414301 ~ 13436909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgctttatgcATGAGCAAAAATAAAGGGCACATATATATTTCAGTACACGGTATACACTATGTATTTAATATCATACACgtgatgtgtaaaaaaaaaaaagtgaaaaatgaccAGTAAACGACCTTTATTGAAACAACAGTGTTTGGGGGGTTACAGAACAACTGCCAGAGATAAATTAAGATATATCAGACAATAATCACTAGTCCCTCTTAAGCCTCGGACTCAAACATCTTCTTCCTGCCATCCATACCGGCCTTGTCCTCAATGTTCTTACGCCAGTCACCAACTTGTTCTGCAGActgtaaaatatacaacataAAACACTTGACACCAAGTCATTACGTGTTTTAGTGTCTTAAAAGACGAAAAGCCCAGAAATTGAATATCCATGTGATGATATCACCGCAAATGGTCATCACATGTTGCTTTGAAGCCTGGTTTTATACCCACCTCCTCTTTGACCTCTTTCTTTACTTGTTTCAGGTTGGCTCTCAGATCCAGGTTCACCTTATGTTTGGAGCCAAGCAGAGCCTGAAGCATAGAGTCTGCAGACATGCGCACCTTCTTCAAAGCTGGCTTCTTGAACTTGCCTTGCAGATCTTGAACTTTAATTTTCAGGTCATCGATCTTTTGTTACACTTGCTCACTTTGGTTTCCAGATCATATCGATCTTCATCTATTTTGTCAAGCTTTGAGTGGAGCTTCTTGCACAGCTCCTGgATCTGCCATAGATCCCGAGAGGTCCAAAGGTGGACAAGTCTCCTCCATGTAAGCATTCCTGGTGGCCTCTGCTGCAACTTCCTCAGCTTCTAGGAGACCTTTAGCAATGGAAAGCATCAAGCTCTGGGGAGCACAGGTGAAACATATCATTTTAGATAAACACATGAGCATAGTAAGAGAGTAAATCATAGGATGCAAAGAGGATATTGTCAGCAATGGCATTAGTAAAGCTGATCAACCTTTAGATGATGCTTCCGACTCGAGGACAtctttttgcttttcagtgggggaaaaaagagaaaaaaatatattaggaAACTATATGGTgtgtaatgaaaaatgtatttaaaatctCAGTGAAGTTGTAGAATATAGCAAAATTACATGTTTCAATAAATTTGACACATTATGCTGTGAAATAGGTCTGCAAGATTTTAGCTCAGAAATGACATTACATTTGTTATAATGTGTGAATAACTAGGACTAAATGTACACAGTATAATGTTCACAGGTTCTGTTAAAAACTAGCCATTTTAAAGGTTAGAAAAATTTtaagcaaaaaatatatttattataaattgaaTTGACTGTTTGTGTTTCATCTGTTTGTCCCTGCACTAATTGTTTGGCATAGCAGATAAGCAAAGaggtttgaggaaaaaaaaaaaaaattagcaaatcAGTAATTTACATTATATACTTACTCAGACATCTTGCCTTCTTGTTTGCTTCAGATCCTGTGAAAAGTTATTGCATTTGTAAGAACTCAGTAACACAGTGCTGTAATTCTGATTTCTGAGAAATTCTGTTTCATGAGAGTGTTTTTAAGGCAAATAGCAAGATTTTTGGGAAAAGATTAACTGGGAAAGACTTTCCTTGATAATACAAGTGAGTTAACAAGAAATTCCATTAGCAGAtctgattatatttatatgtaatttttgTTATATCTTATCCAGCCAAATGACACTCTTCACTGTACAGATTTAAAAGCATTTGTTCACACAGTCATCTAGATGATAATATTAGCCATGCATGGGACTCTCTATGCCTGGGTCTGCTGGACTAGATGGTGTTGATTTTCTGTGGAAACTAATACATGACAGACTACAAGAGTATGGTCCTCCAGTACAGACAGAATGAAAATCCCTTCTAAATTAAGTTAGGCTAGTAAGTCTTAGAGGCCAGCTGTTCACTTCATATGCCTCTTATGGTGATATGCTTGTCTTCAAGGGCACATTTATAACTTCACACCTTGGCATGTGCTATCAATCCTGACATTTGAGATTCATCTTCTTATTCAAATGGCCACTAGTGACAAACATGAAGAAATCTTAACCAGCTCAAATATGGCatgaatgatttatatttatattataaatttgcATAATTAAGGAAAACATCTGTCTAAAATGATTTGTAAATTAGCAGTGCTGGATGAAGACTACTGACACGTCCTTCCCATTTTACATCTACATCAGACTGCTAATAAATGTCATATTCTTAATTTCATCATGGAAATAAATATCATACAagatatgtattttatatgtattattttacagGTTGACATATACACTGATAACTGATAGGCACAGCACGCGCACCAAGCAAGAACATTTGCAACTGACGTCTTTGCAAAGGTATAAGGTTTCAGAATGTTAAATAATCTCATAAATCATCTAGCAcaacatataaatattttaaaaaatcataaatgtaaaactaaaatgtattgttattggTTAGTAACTCatatataataagtataatCACAGATTGATTTGGATATATACCAGACTGGtcatttgaatttgaacatATAGAGATTAGTAAGAATAAATCTAtagtaatttaattaaaatttaaatagatTCCAAATACATTCCAAAAGCACTAATTTCCAGATCATTCACACAGAGCTGgaaatacaaaaacaatctTGCAAATTCAATTACTAATGAACTCAAAATCTCAGCAATAATAAAGTATGTAAATCTTTATTATTGCAATGGCCACTGTATAGTTACCACATCACCAAATATTGGTCAAATGAGTGGGCTGCAATATGTCAAAAACCCGTGtgacataaaatacaattcttttcttctgttactGCAGATCAAATTAAAATCTGCCATTGCTTTCAGGAAGATCCTAGGAGATTGTGTTTGTCATAAGGttccaaggaaaaaaaaataatgtccaAATCCATAAAATCCATCTGTTGCTAAAGAGAAGACAAGCTGAACTCAGGAGAGACAGTTGAGAGGTTCTCACCTAAGAGAAGAAGGCAGCAAGTATGATCCAGAGAGACTGCCACGGGCTACTGAAACACCATGGGGGTTTTAATGACATTGTATGATGGCTCAGCAAACACTGCATCTCTCTTTATGGAATTGGTGTGCCACTCAGACCAACAGATCAGCATGCATCTGAAACTCTAGCCTCAACCCCTCCCTTCAACCTCAGTATAAATAACTCACCGTTTAAGacgtttttcttattttatgacTTATATATCTTGTTAATGTCCTGTTGTGAGCTGAGATTTATGGTCTCTGGAGCTGTACAACTGTTCCACACGTATAAATGTTTCCTGATTTGCAAGGGAAAGATGGTCCCCATGATTGAATGATGGACCCCATTCAAAGCATTGTTAGCTTTCTCATGTTAACAAGTTAGTTTTAACCTTACTCTATATCTGAGCAAGTTATTACCTTTAGAAACAATTATTAGCTTTGTAGTGTTTTACAGTTAGAGGTATCTTTTGCTGGAGGACAGAGCTCCATAAGCAGGATGGACAGCACACTCTAGTGTATGTTAGTATATAAATGCATTCTGGCCCAAGTATTACTTACCTCCAATGCAAAGCAATCTGGTCTGTATCTGCATATgagaaaaatactttaaaacaaatatcaTATATTAATTAAccaatattttacatttcagatACTTACTCTAAGTAACAGACATGCTTTTTCAGAAATGACTTACCTTTCTTCTTAAAGAAACCATTAACAATGAAGCAGAGAGGTTTTGTGTAATCATGAATGTACTCATTCATCATTAAAGTAATtcagaaatgacatttcatcAACATAGTGCATTTATTTGGTAAATAATCATCTCTGAGCACATTTACAAAGAGATTGTAGTGAAAGCACAATGCTGGTTATAGATGGGAACAGAcgattgctttaaaaaaatgggaTAGTTGACCTGTGAATAGTGTAAATATATGGAGTCAGTTGTGGCATTACTACTGGCAAAGTGGGAACTATTTTTATAATGTCACTAAGGGACAAATGTCTGGTCAGTGCATTCAAGCCTCAGTCTCAAACATCTTCTTCCTTCCACCCATGCCGGCCTTGTCCTCAATACTCTTACGCCAGTCGCCAACATCACGCAGTTCCTTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175127 lncRNA upstream 14651 13398824 ~ 13399650 (+) True G147814
TU175123 lncRNA upstream 14651 13399310 ~ 13399650 (+) False G147814
TU175126 lncRNA upstream 14780 13398824 ~ 13399521 (+) False G147814
TU175122 lncRNA upstream 14780 13399310 ~ 13399521 (+) False G147814
TU175096 lncRNA upstream 21552 13392098 ~ 13392749 (+) True G147792
TU175077 lncRNA downstream 5417 13436190 ~ 13436909 (+) False G147785
TU175130 lncRNA downstream 6341 13437114 ~ 13437381 (+) True G147817
TU175092 lncRNA downstream 12356 13443129 ~ 13446391 (+) True G147788
TU175134 lncRNA downstream 16662 13447435 ~ 13447801 (+) True G147821
TU175308 lncRNA downstream 317474 13748247 ~ 13750306 (+) True G147977
XM_026919136.2 mRNA upstream 33049 13372902 ~ 13381252 (+) True prr33
XM_026919512.2 mRNA upstream 56147 13356233 ~ 13358154 (+) True myod1
XM_026918818.2 mRNA upstream 61039 13349323 ~ 13353262 (+) True zgc:172145
XM_026919078.2 mRNA upstream 198310 13192625 ~ 13215991 (+) False mob2a
XM_026919734.2 mRNA downstream 34500 13465273 ~ 13470743 (+) True pdcd2l
XM_026919735.2 mRNA downstream 34500 13465273 ~ 13470743 (+) False pdcd2l
XM_034307428.1 mRNA downstream 42411 13473184 ~ 13522795 (+) False banp
XM_026919960.2 mRNA downstream 42427 13473200 ~ 13522795 (+) True banp
XM_026919961.2 mRNA downstream 42428 13473201 ~ 13522795 (+) False banp
TU175114 other upstream 61048 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 497047 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2107983 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 2110355 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2866509 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_003403080.2 other downstream 330561 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 389817 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2377217 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2377217 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 2377217 15807990 ~ 15819573 (+) False LOC113529564

Expression Profile