RNA id: TU175083


Basic Information

Item Value
RNA id TU175083
length 3935
lncRNA type sense_over
GC content 0.39
exon number 2
gene id prr33
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13372872 ~ 13389196 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGGATGGTCCCTCTGCGCCACATCGCCACTCCATGCACATTCTAAGTAAAGGgttcaggttttatttttggacTGCTATGGAGCTGGTGCCTTCCATTTTGGAGGAAGGGACGATAGTTGAGCTTAACATGAGCCTCTTGTTCTGATACTCTAGGCTGGGAGAAGCAGGCAGCAGCCAGTCGCCCCTAACCAGCAGAAACACAGGTAAAATCAACCCAAATAAgtttcacatttttcttgtttGGAGAAGTGCATGTCGAGGTGTTAAAGCCACCGCACAGGGTGGTGCTGTGGTTCAGGAGCAGGTGTTGTGGGTGTTGTGGCCAGTCGCTTAGATTAGATGTATTGTATCATGCTGCATTAACCTATTGTTGAAAGATTGTGATATTTTTGATGATGGACTACTGTATTGTAATGAATAACAGCAGATGCTGATTAGATGACATTCAGTATTCAGAAGTATTCAGAGGTCACACAAACCAGATGCCAAAAgattagaaattattatttaaatgaggtTGCCGTAAGCTGGAAGTTGTTTACATGTTTTCTCCAAGTgaatctgtttctgtttgttaaAGGGGACTCTTTCTGAAGTGAGCCATCTGTTATCTGTTATCTGTCTTGGTAAgttatttttgtgcatttcttaTTTgcttgcaggtgtgtgtttacctgtttttttgtttttgtttttgtttttttttgctcaaagGTGCTAAGAagaaatacttatgcaaggcctGAATCTACTGCCTGACTATTCTTACACTTTCCTCTTTTGAACATGTGTTGGAGTTACTTCAAATTGGCTAAGCCTCTAGTGCCTTAAAAGGATGACCCCTTCTCATGTGTCATGTGTCAAGCGACAGGTTCAGTTTCTGTGGGAGTGGGGCTCTGAGGAACTCTTATGACCACCCTGCCCTATAGGATACTTTCAGTAATATTTCCacaatttaaaaaggaaattttacttcattttttcaTAGTTAAATAAGATTTAAACAATTAGACAATGGTAGGATAAAATGAGTCAAGTTTGTTTCAGGCGACTTTGAaattaaaaagtcataaaatacatttaaaaaattgttttgcttatttattaggaaagagcagaaataaaagtaaagtcTGTCTAGGCATAGCCTGCAGGATTCAATTAAACTAAACACTGACTGGTAACTAAACAGAGGGATTTCTCACTACAAAAGAAGTCGGTTTTACCGCAGATCCTGTCAACTAACTCTATACAACTTATCTGAACTGGGCAGCAGTGGCTGTCTGTCACATATGTTGATAGACAGCTACTGCTGTCAGATACATTGTATGGAAGGTGATTAGGAGTCAGCTGACTGTGATTTATAATACACCCAACATTAAACCAATCTGCGTCCTGATCTGTAGCTGCCCCATGTTGTGAAAACAGTACTGAggcattattttatatattgggGTGAAAATGTGACAGGGAACAGATAGCTCTCCCTCACCTATGCCTCCTAAAATTAGGCCAAGGAACTCTCCAGCATTTGAGAGGGGTGTGGTGCTGTGTCAGAAGAGGTGGCTGTCATAAACCGTACTGGTCTCCTTCCTATTGCAAAAACAGCTGCTTGGTGTAATCATCATCCGAATGTGATTAACCTCATATAAAACTGAACAGAATGAATAACACATGTCTAGGCTACTACAGTCTATTACATTACCAATTGCTTAGTGACCaataataaaacagcacacaagaaggaatttattaataaaaaggtcaaatttattaaacaaaatactaGTACAATAGAAAAGGGTTTCATTGGTAGAAcaatcaaaatatatattttaaagaaaaacagggAAATCTTTTATGTTGTGATACTGCATGGAGCAGACTAGTGGTGAAAATGATCAtcattgaaatgaaatgtttttcataaatataGTAAAGTGGATTAACTCCAGTGTTCAGGTTTAAACGAAGGAGATTTCTTAACCATAGTTGAATATGCTCAGTGACGAACTGGACCCCATATACCAGTGTCGCTTACTGGAGAAAGGCTTGAACCTATCTctattttttagtatttattttatacataaaacaAACTTCAAAAAGCCCAACTTTACTGTTTGGCTCCAAACCATAGTCCATCCGCAATATCTGGGGTTGGGTCTAACTCCAAAATATAACAAtgatctttttatttcttctaacatcctatttacatatacataaccATACCAAGAAAACAGTATACTTTAGAATCTGATTTGTGGTCTGGAAACATGTGTGGATACATTTTAAACAAGGACTGGTGAGAAAGTGATGTAAACATCATGTGCTTCATGACACAGTAATATAGCTATATATGTGATGCAAATGATAAAATCAACAAGACCCACCCTATACTAAAATCTGCTGCTAGACATGTATCTTAATGAATGAAAGTTATTTATGCATGTGAATGTAAACCCTGCAATAAACAAAGGGTCCTTGTAAAGCATCCAAATCACCATAACTTGGACGTATGCAACAGGCGTTTACAAGTCATCGTGGCACAGGTCccctaaaaaacaaacaaaaattaaatgttagtcATAGGTCATCTCAACACACCACATTGTTAATAGgcattttacacatttagaaataaatttcatgatatatttttccatttagcAGTATAGAACATAAAAGGCATCTAATTATTAATATACTtgggacagaaaagaaaaggtattgtaatttatagcaacaaaatatttgtttttcactgctaaatagtgtatgttaagatattaataatgaaataaattatattagttCAGGAGGTTGCATTTCCCGCTCTGaattcaatttcaatattttCTTGTATGCCAGCAGTATGCTTTTATAAAGTAACTGTCTCCAGTGAGTCTCTGAACAGCTTTTGGATCCTTTCTGTTGTAATATTCAGAGGCCCATGTAGCACACTCCCTTGCATATTCACCCTCACATCTGTTATAAGTCACCTGTCATACACTGTATTTTTCAAATCAGATCTGGAAACTGAGAGGATCATGGCAAAATTTATATTCAAAATACTTttgaattatatttaaaatactcagtgtattttattttatgttttggattattACCTTTTTTCAGGATACACTCATTTAATTTCTTGCGTTATGGAATTCTATCTTTGAAGGTTAATTTTATAATAGAGgcatttttcttatttcaatTCAAACCACATGGGGTATATGCACTTGCACACTAAACTATATACACTaatatgtttttcctttttgctcCAGGGGGCCGACATTTTTTATGGCTGTAAATATCCGCAACGTTGCCCAAGCAGGCCTGCTTTCCCAGCAGTACCCACCCCCCCTACTTCCTAAACCTGGAAAGGAAAATGTCCGGCTCCAGAAGTTACTTAAGAAAAGTGCCAAGAAAAAAACTGCTGCCCAGGCTTCCCAGACACCAGCCCCTTTCCGCTCATGCCTCTCTCCAGTAACTGAGGCTAGTCCTGACCTGGAGTACAGTGACCACTCAACCCCACCCAAGACACCAGAAACACCAATCTATGGAGacGCTGctgctcttcctcttccttcctGCGCTCCTCCTCCTCACGCACTCTTCTGCgttcctctctcctcttcttgAGCTCCTCCAGCTCCACCTCAGCCTCAGCTTGCCGCTGGCGAAGCTGTTCCAGCTCCTGGCTCTCCTTTTCCTGGTGGCTCCGCCGAAACTTCTCCAACTTCTGCTCTGTCTCCAGACTGGCCCCTGCCTGTTCCCTTGACTCTAAGCCCTGACCTACGATCCTGCTGGAGGAGAACATGGGGAAGAAGGGTCATGAAATATCAGTCACAGCAGGCTGTTTTGGAAGTTCCCTGGCAAGAAGCCATGTCTGACAACACAgcatcagctttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175059 lncRNA upstream 1096 13360035 ~ 13371776 (+) True G147784
TU175060 lncRNA upstream 1096 13360035 ~ 13371776 (+) False G147784
TU175061 lncRNA upstream 1096 13360035 ~ 13371776 (+) False G147784
XR_004578665.1 lncRNA upstream 39828 13329642 ~ 13333044 (+) True LOC117597924
TU174869 lncRNA upstream 184588 13187691 ~ 13188284 (+) True G147641
TU175091 lncRNA downstream 1121 13390317 ~ 13390708 (+) True G147787
TU175096 lncRNA downstream 2902 13392098 ~ 13392749 (+) True G147792
TU175126 lncRNA downstream 9628 13398824 ~ 13399521 (+) False G147814
TU175127 lncRNA downstream 9628 13398824 ~ 13399650 (+) True G147814
TU175122 lncRNA downstream 10114 13399310 ~ 13399521 (+) False G147814
XM_026919512.2 mRNA upstream 14718 13356233 ~ 13358154 (+) True myod1
XM_026918818.2 mRNA upstream 19610 13349323 ~ 13353262 (+) True zgc:172145
XM_026919076.2 mRNA upstream 156881 13189684 ~ 13215991 (+) False mob2a
XM_026919734.2 mRNA downstream 76077 13465273 ~ 13470743 (+) True pdcd2l
XM_026919735.2 mRNA downstream 76077 13465273 ~ 13470743 (+) False pdcd2l
XM_034307428.1 mRNA downstream 83988 13473184 ~ 13522795 (+) False banp
XM_026919960.2 mRNA downstream 84004 13473200 ~ 13522795 (+) True banp
XM_026919961.2 mRNA downstream 84005 13473201 ~ 13522795 (+) False banp
TU175114 other upstream 19619 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 455618 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2066554 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 2068926 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2825080 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_003403080.2 other downstream 372138 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 431394 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2418794 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2418794 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 2418794 15807990 ~ 15819573 (+) False LOC113529564

Expression Profile