RNA id: TU175123


Basic Information

Item Value
RNA id TU175123
length 341
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G147814
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13398824 ~ 13399650 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGGAGGTTCTGCAAGCCTTGCTTGCTGGAGTTTCGTCTCAAAATTGCACTTGACatctctctttcctctgtcGCTCTTTTGACTGAACTAGTAGAGCTGAAAGAGTCGTCCTTGCACTTTGGAATCTTTGTATTCCTGTGTGTCTTTGCCAGCTCCACACAACTAGCACTCTTCCTGTGAGCACTTTTCCTACGTCCTGTCCTCAACGCTGCCTGGTGAAAATATCAAGTGAGATCCACACAACGCTCAGTCCTCTCTGAGTGACATGCTTTAGTCACAGCCTTCCTCCACCCCTCCTCTGTTCACctctcctccctctttctctctgcctagTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175096 lncRNA upstream 6561 13392098 ~ 13392749 (+) True G147792
TU175091 lncRNA upstream 8602 13390317 ~ 13390708 (+) True G147787
TU175083 lncRNA upstream 10114 13372872 ~ 13389196 (+) False prr33
TU175060 lncRNA upstream 27534 13360035 ~ 13371776 (+) False G147784
TU175095 lncRNA downstream 13842 13413492 ~ 13432584 (+) True G147791
TU175070 lncRNA downstream 14651 13414301 ~ 13430773 (+) False G147785
TU175072 lncRNA downstream 14651 13414301 ~ 13430773 (+) True G147785
TU175078 lncRNA downstream 14651 13414301 ~ 13430773 (+) False G147785
TU175077 lncRNA downstream 36540 13436190 ~ 13436909 (+) False G147785
XM_026919136.2 mRNA upstream 18058 13372902 ~ 13381252 (+) True prr33
XM_026919512.2 mRNA upstream 41156 13356233 ~ 13358154 (+) True myod1
XM_026918818.2 mRNA upstream 46048 13349323 ~ 13353262 (+) True zgc:172145
XM_026919078.2 mRNA upstream 183319 13192625 ~ 13215991 (+) False mob2a
XM_026919734.2 mRNA downstream 65623 13465273 ~ 13470743 (+) True pdcd2l
XM_026919735.2 mRNA downstream 65623 13465273 ~ 13470743 (+) False pdcd2l
XM_034307428.1 mRNA downstream 73534 13473184 ~ 13522795 (+) False banp
XM_026919960.2 mRNA downstream 73550 13473200 ~ 13522795 (+) True banp
XM_026919961.2 mRNA downstream 73551 13473201 ~ 13522795 (+) False banp
TU175114 other upstream 46057 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 482056 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2092992 11295128 ~ 11306318 (+) False hrh2a
XR_003403100.2 other upstream 2095364 11295128 ~ 11303946 (+) False hrh2a
TU173183 other upstream 2851518 10543875 ~ 10547792 (+) False si:ch73-233f7.1
XR_003403080.2 other downstream 361684 13761334 ~ 13775183 (+) False ces2b
trnar-ucg_5 other downstream 420940 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_004578669.1 other downstream 2408340 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 2408340 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 2408340 15807990 ~ 15819573 (+) False LOC113529564

Expression Profile