RNA id: TU175712


Basic Information

Item Value
RNA id TU175712
length 1861
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G148321
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14054462 ~ 14056322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCcaagatttaatttttaaaaagttgtagCAATATCATGCTCCAAACAAAACTTTATTCCAGTACATTACAACAGTagatgaagaaagaaaacttATCAAGTATCTATTAAGCACCTAGCATTTAGCTCTAAAATAACCAATTATGTATGAGTAAGCACCGTCAGTCAAATAGTCTTCAATAATCTCAGCTCAGTCAAATAATCTTCTGAAGAAGCTCTTCTTAACTGGAGTCATTTTCAGGGTTATGGGGGCTTTGCGGTGCATTGTCTTCATTGGGACTCTTTTCAGAGGCATTATCTTGCGTGGAGGAGTCATTTCCTGCCTGGCAAGGCCTCCATGGTCCAGGCAATAGTACTTGCTGTTATCCTGAGAGAGGCGTAGTAGTAGACTCTCTGAGAGCTCCATACACTGAGCATGGACCCAGTGGCCACCTTCGCCTCTGGAACAGAAGATCATGGCTGGTCTGGTGAGCTCAGTGGAGTAGAAGGGCTCCCAGGTGTTGACGTCTACCTGACATGTGAGGCAGCACTTGATCCAGTAACCAGTCTGAGAttcatcttcctcatcttcctcattGTAGGTGCCTCCCTCTCCATCACTGCTGTACTCCATCTCGTGAGGTTCACGCCCAAAATACAGTTCTTCTGAATCTTCTAGAGGTGCTGAATCCTCAAAATCAGTGGATTCTTGGCTGCATGTCTGGGTTGGatcctctccatctccctcctgCTGGAAGCTTAATTGGTAAAAGTAATAGGCATCTGAAGGTGTGGGATTTGTCCCTGATGGTATAACAATTAATGCGCTCCGCTTTTCTAGGGTTCCACCAAACCAGGTAGGGCTTTGGTTGATCTCACTGCTCCACTCTGGAGGCTCTCTGGGCTCCATGCGTATCCCGACATCATCTAGTGCAACGTAGGTGCACAGCATTCTCTTTTGGGAATCTGACTGGTAACCACCAAGAATAATGTATTCGTGAGCAGGGCCTATGGGAATTGCAATGGCACTTGTGATGGAGAGACCATCATTAAGGATCTCACAAGAGAGTAGCGGACTGCCTAAAAGAAGCTCTACACGCAGCCTGAACAGGCGAGGCGGTCGGCAGTCAGTAGAGGCAATGTGGCCGCCCAAGAAGTAGACACAGTCCTCTCGTGCCAGTGCCAGGTGGAATGACTGGCCGTCAGTGAGCTCTGGGAGGGTGTGTGCTGAACAGCAGCCAAACTCCAGATCAATGAGGTAAATCTGGGGTGGACAGTCCACCATGCAGTTCCAGGTCTCTGTGGTTCTCTCAGCAGGAGGCATGTAGGATCTGCCACCAAACAGAACACAAGCAGATTTCCCTCTGCTGTGGACTACACTAAGGGTGTGGCCATACCGCGCTCCTGGAAGTTCACCGACCAACTCTTTCTCCTGGCATCTAAGTGTAACCTTCCGATTACATCCACGATTGTCAACACTAAGTATGTAGAGGCTTGGGGACAGCTCGTTGTTGGGTGTTCGGCCTCCGTGAATGAGGTAACACTCAGGGTTATCATTCTGAGGCTCTACGTGAGCAATTGCTGGGTAACGCAGAGGTGGGAGATAGCAAGAATTGTTGGAGAATGAGATGGCACGCAACTTGAGCTCCCCATTTTTGATGCGTACACCAAAGACACCTGTTGGGCAGGAACGTTTGGGCCATCCTTTCTGCCCAAAAAGATAAGCATCACCTTCTAGATGTAATAAGGAGCAGCCGGGCTGCAGAAGACTTGCACAGTTTATGGAAGTCAGGTGCTGCAAGGACATTTTTCTGCAGAGAGCTGTAGAGAGAAACGAAATGTCAGTTAATTTGTGATCTGCTCAAACTGAAATAGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175318 lncRNA upstream 225131 13791156 ~ 13829331 (+) False fanci
TU175308 lncRNA upstream 304156 13748247 ~ 13750306 (+) True G147977
TU175134 lncRNA upstream 606661 13447435 ~ 13447801 (+) True G147821
TU175092 lncRNA upstream 608071 13443129 ~ 13446391 (+) True G147788
TU175130 lncRNA upstream 617081 13437114 ~ 13437381 (+) True G147817
TU175720 lncRNA downstream 28012 14084334 ~ 14084563 (+) True G148326
TU175721 lncRNA downstream 28897 14085219 ~ 14085421 (+) True G148327
TU175875 lncRNA downstream 243695 14300017 ~ 14300236 (+) True G148459
TU175944 lncRNA downstream 446300 14502622 ~ 14502882 (+) True G148521
TU175974 lncRNA downstream 667029 14723351 ~ 14738350 (+) True G148551
XM_034307169.1 mRNA upstream 1028 14046856 ~ 14053434 (+) True rag1
XM_026918881.2 mRNA upstream 26840 14021971 ~ 14027622 (+) True si:ch211-256a21.4
XM_034307219.1 mRNA upstream 32581 14005432 ~ 14021881 (+) True accs
XM_034307214.1 mRNA upstream 142446 13891759 ~ 13912016 (+) True man2a2
XM_034307215.1 mRNA upstream 142446 13891759 ~ 13912016 (+) False man2a2
XM_026919502.2 mRNA downstream 99 14056421 ~ 14082827 (+) False iftap
XM_026919503.2 mRNA downstream 118 14056440 ~ 14082827 (+) True iftap
XM_026919504.2 mRNA downstream 170 14056492 ~ 14082827 (+) False iftap
XM_034307488.1 mRNA downstream 3139 14059461 ~ 14082827 (+) False iftap
XM_026918840.2 mRNA downstream 566973 14623295 ~ 14630439 (+) False ehf
trnar-ucg_5 other upstream 233800 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 279279 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 701209 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 1137208 12916919 ~ 12917254 (+) True G147542
XR_004578672.1 other upstream 2748144 11295128 ~ 11306318 (+) False hrh2a
XR_004578669.1 other downstream 1751668 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 1751668 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 1751668 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 1984853 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 3777915 17834237 ~ 17842535 (+) True G150589

Expression Profile