RNA id: TU176092


Basic Information

Item Value
RNA id TU176092
length 2702
RNA type TUCP
GC content 0.50
exon number 1
gene id G148647
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 14810004 ~ 14812705 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTCAACATAGTGAAACACTTTAGTTCCACTAGATTTAATGGCATGtaaaaatgacacaatttttaatataaaaaagaacTGGAATGTTATCACATATTGTGATTTAAATTAGTTAAATAGAATTCAGACTTCACAAAGCAAAATCCCACAACACACTTTCAATTCAACGCACATCCCACCACTTCATTAAGGCCATGAATGAAATTGTGAAGCTACAGAAGATAAAGATGTGTTTTTATATGAATCACTGACCTTTCAGCAGTGTCAATATTACCATTTCACCACACTCTGCAAAAAACTAAGCATTGTTACTAAATTACAGACATTGTCAGACTCGTGTTAATCCAGATGTAACCTTCTGTTTATCGAGTACAATATTCTAATAAATAGAGATTCATCCATCCAGTATTGAGGCTTGGCATTGGGTCTGATACTGCTTGAAATGCTGGATCATTAAGTATTAGATCTTATATGATGTATTTTCTGATCCGAGCCACTGATATATTTTACAGCATATTTTACTGGCCCAAGACAGACCTTCGGGCACAACATATCATAAAACTCCACCGTCACATGGCTGATGTTTTGCAAAACTTGGCAACCAAAGCTTGCAGAAAAGTTGCCTGGTTACTGATAGGATGTCAGGGTTGGATCAGGATTGGGGAGCTTTATTAACAATATCTTAAGGCTGTCCTACATGGAAATAGTGGGATTAGTGCATCCCTATTAATAAAAGACAACAATGGCAGAAGCAGCATACATCAGCACTTAGGCCCTTCTCCAGTGTGTTTACAATGAACTTGACTCATCATCATGACTCATTCTATCACAAGTAATATGCACTGTGTTTCCTGTGAAATTAAGACTTTTAAAAACCAAAAGTAATCGCATATACAAAACAAACGGTAGCCTATGCAGCCACGTTTAAAGATTTGTCCCTACAGGAGGTAGCTAGTCCAGATATTCAGAAGTCACACTGAACACAGTTCACGGGTCGCGTGGTGTAATGGTCACCTTGGTAACTAGCAGTCCTTATCCATACTAATGTGATAGCAGGATCCACgcgagagggaaaaaaaaaacagaaagacaaaaacattacagtttttcGTGCTTTTCTTTACAGTGCAAAATGTGCTCATGAATTCTGTCTATTCTGTCCTGCAGTATCCTGGCTTGCTCGTCGGAGAGAAAGCCGAGCTCAGCCGCTAAAGGCTCGCTGTCCCGGTAGAGCTGGAGCAGGCGCGCGCGCGTGTCTCTTCGCCGGTGCAGCTCCGCCACGCGCCGCGCTGTTTTCCTCCTGAACACGCACACCGAGCCGAGCGCCGCGCTGTGATACTTCTCCCACATATCCAGCACACGGTAGCCGTGCACCAGTCCAGCCTCGTTGTCGATGAAGACCAAGCTGCCGCGAGGAGTCCTGAGCAGGTTGCTCGCGTCTCGCTCCATGGCTTTGGCGTCCCACTGCAGGCTAAACAGGTTGCTCACGAGCCGGTCGAAGTTGGCCGTGATGTAGTCGAGCACGACCAGGTCGCTCCACTGCACCAGCTCGAGCAGCTCCGCTTTGGTTTTGGTTTGGAGCTCGGGCTGTAGCGGGCGCAGCCCGAGGCCGGAGCGGTGAAAAGGAGCAGGCACGCCTGCCGGACTCAGCTCGGCCACCCACTCGCTGAGGGACACCACGGCACTCGGCGTCCACTGTAGCGCCTCCATGCGCCGCCTCACCTGCGTCCACTGCTCGCCATCGAGGCGCAAAAGCGCGAGCGGCGGCACGTTGGTGATCCCGAGCAGAGCGGCTAGGTAGTAAGACAGTGTTTCTCCTTGCACCTGCTCGGGGTTGATGCCGTAACGTACACACGCGCGGGATCCGTCCGAGAACGTGGCCAGCTGGTTGGACGTCCTGCCGCAGCCCGGCTCTAGAGACACGACCCGGCCGCGGCGGACTCGCTCTCTCCACGCGCGGGCGTCTTCCTCCACAAAGCCCACCGACACCCCATCCTCGAGACGGTGACTCCAGAAGATCCCGTCCTCTAGAAACTGCTCGCTTTGGTTTTCTGCTGCGTGGAGCTCCCGCTCTGTCAACTCAAATCGATGTGGGTTATCTTTACTCCCTAATGAGACCGTTTCACCATCGCTAGCGTTGCGAACTGACTGTAATCTGGAGCCAGTCGGAACGGCGAGTAAAGCTCGAAAAGTTCCCGAAAGGTCCGGAGATGGGTCGGGATAGGCGGGATGTCCGCTGTGATCGGGGACGCTCCTCGTGTTCCTCTCCAGCCTCTTTTCCAAGCCGCTCCAGAAGTGCAGCACGCCTGCACAAGTgcagagcagcagcagcgcCGCCAAGTTTGCCCACGCCGCCCTCATGTCGTCCGGCAGCTAACTTACAGGTCCAGCCGCCTCACAAGCTACTCACTCACTACATATCCTCCATTCACGACGCTGGAAGACACAAGTGCGCTGAGAAACCGGGGCCGTTCACGCGGCATTTCTGCTCTGCTGCTAGAATTCGGTGCAGTTTCACTGCTCCTGTGTGCCAAAGCGCTCATCTCTGTTCATTCTCACATTTCCCACGAACAGAGCATACAACTCTACCATTCCTTCATCCAGTCTGTATCAGAcgctgatatgtgtgtgtgtgtgtgtgtgtgtgtatctgggtCGCAGATGTTCAGCGCGCTCTCTCGGTGTTCATGTCCTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176039 lncRNA downstream 127251 14681515 ~ 14682753 (-) True G148612
XR_003403103.2 lncRNA downstream 294477 14513165 ~ 14515527 (-) True LOC113530044
XR_003403104.2 lncRNA downstream 294584 14513165 ~ 14515420 (-) False LOC113530044
TU175779 lncRNA downstream 788504 13998570 ~ 14021500 (-) True G148371
XR_003403064.2 lncRNA downstream 974249 13825782 ~ 13835755 (-) True LOC113529512
TU176283 lncRNA upstream 224520 15037225 ~ 15037462 (-) True G148833
TU176393 lncRNA upstream 314527 15127232 ~ 15128055 (-) False G148926
TU176391 lncRNA upstream 314761 15127466 ~ 15128055 (-) False G148926
TU176392 lncRNA upstream 314761 15127466 ~ 15128506 (-) True G148926
TU176385 lncRNA upstream 318071 15130776 ~ 15132497 (-) True G148920
XM_026919778.2 mRNA downstream 28667 14748777 ~ 14781337 (-) True pamr1
XM_026919379.2 mRNA downstream 71653 14711998 ~ 14738351 (-) False slc1a2b
XM_026919378.2 mRNA downstream 82437 14711998 ~ 14727567 (-) True slc1a2b
XM_026919380.2 mRNA downstream 82438 14715107 ~ 14727566 (-) False slc1a2b
XM_026918655.2 mRNA downstream 443386 14319121 ~ 14366618 (-) True lrrc4ca
XM_026919000.2 mRNA upstream 183402 14996107 ~ 15019198 (-) False LOC113529649
XM_026919001.2 mRNA upstream 183403 14996108 ~ 15043838 (-) True LOC113529649
XM_026919002.2 mRNA upstream 183403 14996108 ~ 15033520 (-) False LOC113529649
XM_026919005.2 mRNA upstream 183403 14996108 ~ 15029906 (-) False LOC113529649
XM_026919006.2 mRNA upstream 183403 14996108 ~ 15018912 (-) False LOC113529649
TU175596 other downstream 977115 13825897 ~ 13832889 (-) False LOC113529512
trnar-acg_1 other downstream 1019459 13790473 ~ 13790545 (-) False trnar-acg_1
trnae-cuc_22 other downstream 1356532 13453401 ~ 13453472 (-) True trnae-cuc_22
TU175361 other downstream 1451866 13356236 ~ 13358138 (-) True G148019
TU174954 other downstream 1702302 13003696 ~ 13107702 (-) False LOC113529632
TU176301 other upstream 273418 15086123 ~ 15088016 (-) False dynlrb2
XR_004578773.1 other upstream 408267 15220972 ~ 15228032 (-) False LOC113529695
XR_004578830.1 other upstream 1177375 15990080 ~ 15992094 (-) False islr2
XR_003403120.2 other upstream 1940471 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 2240661 17053366 ~ 17058906 (-) True LOC113529460

Expression Profile