RNA id: XM_026919330.2


Basic Information

Item Value
RNA id XM_026919330.2
length 2631
RNA type mRNA
GC content 0.44
exon number 15
gene id slc5a12
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15563306 ~ 15652684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCACTGATCACGCAGCGATCACAGTGTCCCAACCACAGACGAAGAGTGAGGCTCCTGGGCATAGagacagaacacattttctaatcttattattataatttaatagtGAATATTATCACTGACTTCCAATGGGACTTCCAAATGGTGCTGTGGGAACGTTCCAAGTGTGGGACTATGTGGTGTTTGCTTGCCTGTTTGTGGTATCTTCTGGTATTGGAGTCTTCTTTGCCATAAAGGAGAGGAACAAGGTGTCGTCAAAAGCATTTTTGGTTGGAGGACGGCAGCTGACCTGTGGTCCAGTGGCACTCTCTCTCACAGCCAGTTTCATGTCAGCAGTGACTGTTATTGGAACTCCTTCAGATGTGTACCGCTTTGGGGCTTCATTTATTATCTTTGGCATTGCCTACACATTGATGGTGATCTTCACAGCAGAGGTCTATCTTCCCGTGTTTTACCGGTCAGGCATCACCAGTACATATGAGTATCTAGAGCTACGCTTCTCTAAGCTGGTCCGTATGGCTGCTACTGTCATTTACACAGTGCAAACGGTTTTGTACACAGGAGTAGTAGTTTATGCTCCAGCTCTAGCTCTTAATCAAGTGACAGGGTTTAATCTCTGGGGATCCATATTTGCTACTGGAATTGTCTGCACCTTCTACTGTACACTGGGAGGACTAAAGGCTGTAGTTTGGTCCGATGCCTTCcagatggtggtgatggtggctGGTTTTCTCACTGTGCTAGTGCAGGGCACGCATGTAAGTGGAGGAATCAGTGCAGTATGGGAGACAGCACAGGCTGGACAGAGACTAAACGTGTTTGACTTTGACCTCAGTCCTCTGAGACGTCACACGTTCTGGACAGTCTCTGTTGGGGGCATGTTCACATGGCTGGGCATCTATGGTGTAAATCAGTCCACCATCCAGAGGTGTATTTCCTGTAAGACAGAGACCCATGCTCGCTGtGCTCTCTATCTGAATCTGCTGGGTCTCTTGTTGATTGTCTTCTGTGGTGTGGTCTCAGGACTCATCATGTACGCTTTTTACTCCCGTTGTGACCCCTGGACAGCTGGCTTTTTGTCAGCTCCTGACCAGCTCATGCCATACTTTGTACTAGAAGTATTGGGCAACTTTCCAGGTCTGCCTGGGCTGTATGTGGCTTGTGCTTTCAGTGGGACCCTCAGCACAGTGGCTGCCAGTATCAACGCCCTGGCCACAGTGACATATGAAGACTTTGTGGGCCAGTATTACAGAAACCTCTCCAACAAAGCAGCTATGTGGATCAGTAAAGCCCTGTGTGTGATGTTTGGAGTAATCTGTACCAGCATGGCAGTAGCAGCATCAAACATGGGAGCAGTTTTGCAGGCTGCTCTCAGTATCCATGGCATGTGTGGCGGGCCAACGCTTGGTCTCTTCTCCTTAGGAATTTTCTTCCCTTTCACAAACACTATGGGGGCTATTGGAGGTCTGATACTGGGAATTTCTTTGTCCTTCTGGGTGGGAGTGGGAGCCTTCATCCACCCTGCTTCCCCCAACAGCACCCACCCCCTGCCTCTGAGCATAGAGAACTGTAACCTACTGAACACCACAGCTACCAACAGCACTCAGACAGCCAGCTCAGACACAGGATCTGTGCTGGCTGAGTCCTGGTACTCCATGTCCTATCTGTACTATAGTGCAGTGGGTTTTCTGGCCACAGTTATAGGAGGCCTGCTCATCACGCTGATAACAGGCCCCACTAAGCCACAGGAGGTGAAGCCTGGGCTGATTCGGCCAGTGTGTGACCTGTTCTGCTTTTGGTCAGAGAAATACAGGACATTGTGCTGGTGTGGTGTCAACCACGCAGAGGACAAAGTGgaattGGATGGTGTGGATTTTGGAACAGCATGGGAGAATCACTCAGATCAGGACATTAAAAGTGAGATAAATGGAAGCAAGGAtgaggcttatattaatgcagctTTTGTCCCAGACAAAGCTGGCCAAGTTCTGTCAAAACAGCTATAACCATgaaaaattagtttaaaaaatactttacttAAATATATTACTTAAACTACAAAAGAAGACACGTGCCATTTCATACaggggaacaaaaaaaaaataacaccaacCATGTCAGATAAAAGATACAGTCAGTGATTTATTACAGAAAAGAGTGATATCCAAATTTATCCTATAGATGTTTTGtacaattttttcattttttttttttacatgtaaacaGGGATGGTGTAAACAAAACACGCTGTTGATATTGTTTATGTCACCATATTAATCAAGTACAAATCAGAATACACTGAATGTGCTATTGTATTGAAATATTCTGCATGGTACATAGTGGGTTCCTTAACGGTCATCACCAGCTCATTTAATGGGGTGAGAGGTCAGCGGGTGATTATATATCTAAACCTATTATCTCATTGAGTCAGCACATATTGCCTTTTTAGCATATTACCCGTCATTAGTCATTGCAATTGTGCATATCTTACTAATGCATAATGGATATTAAACTGTCTCATAACTACACTCAGCATTATTTTCTCTAAGCAATGTAAAATATCATGTCATAGCCACTGCTTTTTATGTAATACctgatttgaaaataaatggcaCTCCAGTTTTGCTTA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176640 lncRNA upstream 75500 15567836 ~ 15569487 (+) True G149131
TU176588 lncRNA upstream 161084 15483074 ~ 15483903 (+) True G149091
TU176586 lncRNA upstream 162959 15481687 ~ 15482028 (+) True G149089
TU176585 lncRNA upstream 163417 15481252 ~ 15481570 (+) True G149088
TU176517 lncRNA upstream 193083 15451576 ~ 15451904 (+) True G149027
TU176794 lncRNA downstream 58382 15711013 ~ 15711917 (+) True G149248
TU176798 lncRNA downstream 68717 15721348 ~ 15725091 (+) True svip
TU176815 lncRNA downstream 102034 15754665 ~ 15754912 (+) True G149268
TU176828 lncRNA downstream 119207 15771838 ~ 15818368 (+) True G149276
TU177010 lncRNA downstream 372213 16024844 ~ 16026512 (+) True G149427
XM_026919331.2 mRNA upstream 9997 15631055 ~ 15634990 (+) True si:ch211-87j1.4
XM_026919335.2 mRNA upstream 24568 15609440 ~ 15620419 (+) True clpxb
XM_026919062.2 mRNA upstream 39250 15577183 ~ 15605737 (+) False lrrk2
XM_026918681.2 mRNA downstream 68647 15721278 ~ 15723719 (+) False svip
XM_026918680.2 mRNA downstream 68661 15721292 ~ 15724866 (+) False svip
XM_026918674.2 mRNA downstream 98508 15751139 ~ 15752526 (+) True fancf
XM_026918826.2 mRNA downstream 155359 15807990 ~ 15822591 (+) True LOC113529564
XM_034307166.1 mRNA downstream 155359 15807990 ~ 15822591 (+) False LOC113529564
trnar-ucg_5 other upstream 1824325 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1869804 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2291734 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2727733 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4341041 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 155359 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 155359 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 155359 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 388544 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2181606 17834237 ~ 17842535 (+) True G150589

Expression Profile