RNA id: TU176640


Basic Information

Item Value
RNA id TU176640
length 1630
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G149131
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15567836 ~ 15569487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACAAATTTTATTCAATAGAAAAAGAGGAACACAGTTTTGTCTAAACAAAATAGTTACATTAATGGAATAATGTAAGAGACAGCCTATACAGTAGACtggAGCTATGTCCAACACCTGGGTTTCCAACATGGGGTTCATGGACCCTAGCGGTCAGCAAAGATACTGCAGGAGATCTGTGGTCAGATCATTGTGTATACTttcaaaaatatacagtatgtactatgtatataaaatatgcacTTACGTcatatgtacatttaatttccaaaatGTGGAGAATTTCGGGGTTTGTCCATTAAATTTAAAGGGGGCTCACATTGTTCTTTGTCTATTTTGGAAACTGTTAATCTAACATAATGAAACATAATAAtcaacataataaaatatataccaTTCCTTAAAGGATCAAGTTGTTTTCTCTCCAACtcaatataatcattaatatatgATTGTCAGACTTGTAAACACTTGTAGAGcatgattttttccccaaaaccaTAGATTTGTTCATGTTAAATGCAGTGACAGAGCTTCTAGTTTCAACTAGATTACACCAAGACCCATTCTGACTCTTTGTTAGTACGTGTATATaagtatctttaaaaaaaaaaaaagtgtcagttCATTGATCATGATCTCATATGTGCTGTTCATTGCTCCTGAAAGGCAAATCCAGGTATAACTTCACCATTATTGCAGCTGTATTAgaagacagacatacagaaaaaaaactatgttttaaacatatatttctggtacattttttatacattattctagatttttttttacaaaaatacataaaattgtAAGCTTGGCATCAATgccaaacataaaaaaacaaacaaacaaacaaaacaaataaacaaaaactaataattatttatagtaCTTACTGATATGTAAGCAATTCCTTCCTCTGGTTCCAGTGTCCCATAATGCAACTTTCCCAAATCCAAATGAGGCTACAACATTTAAAACTGCCACATTTAGTCAGTTGACAAAAATACAATACTGAGTATTTGACAcagataaaatataatgtagTATTGGTACCAGtctttaaccctaaccccacaTCCTCACCAGTCACCTCATACCACAGAAACTCAGATGCTCATAGGTGTCTTATCTTCTATGGGAATGTAGATATAAATCAGGAAGTATTGTTCTGTACCATAACCAGAAAATATTGTTCAAGACTCCCAACAGTTCACTGAAAGGTAAATGAGAATGGACCTACAATCTAGAGGAAAGTTTATCACCAGTTCTTAGGCAGCAACAATGCTGATTCTCTGGAATGCCATGGAGACCCACACTCCACAGAAAACTGAGAAACTGTGAAAACTGAGATCAACACCTGGAATTTAACACCTGCAGAACCAGAAAAAGATGGGAAGAAAGTGCCCAAAATCTACTCCCCATCAGAGATGTCCTCATCTGAGAGAAGGTTGCCCCCTTTTACCctgatgtaatgtgtgtgttcgCCACCCAGTGCGCCACAGGTGCAGAGCCTTCTGCTAAACAGAGTCTCTATGTCCTCCAACATGAGACCCTTGGTCTCTGGCAGACAGCCCAGCAAGAAGAGGAATCCAAGCACAGCCAGGCCAGTGTAGAGGAAAAACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176588 lncRNA upstream 83933 15483074 ~ 15483903 (+) True G149091
TU176586 lncRNA upstream 85808 15481687 ~ 15482028 (+) True G149089
TU176585 lncRNA upstream 86266 15481252 ~ 15481570 (+) True G149088
TU176517 lncRNA upstream 115932 15451576 ~ 15451904 (+) True G149027
XR_003403114.2 lncRNA upstream 262451 15298770 ~ 15305385 (+) True LOC113530090
TU176794 lncRNA downstream 141526 15711013 ~ 15711917 (+) True G149248
TU176798 lncRNA downstream 151861 15721348 ~ 15725091 (+) True svip
TU176815 lncRNA downstream 185178 15754665 ~ 15754912 (+) True G149268
TU176828 lncRNA downstream 202351 15771838 ~ 15818368 (+) True G149276
TU177010 lncRNA downstream 455357 16024844 ~ 16026512 (+) True G149427
XM_026919608.2 mRNA upstream 119095 15446796 ~ 15448741 (+) True mphosph6
XM_026919666.2 mRNA upstream 121781 15444108 ~ 15446055 (+) True snx20
XM_026919664.2 mRNA upstream 121781 15444499 ~ 15446055 (+) False snx20
XM_026918774.2 mRNA upstream 134297 15427516 ~ 15433539 (+) True sall1b
XM_034307579.1 mRNA upstream 145983 15411479 ~ 15421853 (+) False rbl2
XM_026919060.2 mRNA downstream 7696 15577183 ~ 15605737 (+) True lrrk2
XM_026919062.2 mRNA downstream 7696 15577183 ~ 15605737 (+) False lrrk2
XM_034307317.1 mRNA downstream 7696 15577183 ~ 15605737 (+) False lrrk2
XM_026919061.2 mRNA downstream 7696 15577183 ~ 15605737 (+) False lrrk2
XM_026919063.2 mRNA downstream 7696 15577183 ~ 15605737 (+) False lrrk2
trnar-ucg_5 other upstream 1747174 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1792653 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2214583 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2650582 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4263890 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 238503 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 238503 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 238503 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 471688 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2264750 17834237 ~ 17842535 (+) True G150589

Expression Profile