RNA id: XM_026918672.2


Basic Information

Item Value
RNA id XM_026918672.2
length 4723
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC113529470
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15711993 ~ 15719575 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagaagaagaagaagaagaagaagaggcggaagaagaaaaggaagagggGCTGGCATTGGCGCTGTCTGGTTCTTAGACAAAGCTAATACATGGTACCTGACTGGAGCGTTGCTAACATAACAGATATACTCGAGTATAACTGACAGAGGTTTGTGCATACAGCTGGTGTTGTTTGCAGATTCATTCTCGCTGCTTTGGGCTTTTGGACTGTGAGTCTATGGATGTGATCCGGTGTTTGCGCTCTCTCCTGGACCTCCATGTTCAGCTGCAGAGAGCTGTAGCCCTTCAGGGAGAGATCCAGGCACAGTTTCTTGCTCAGCTTTTACATCCAGACAATGCGAGCCCACAGCAGCTGCCTCTGCCACAGCTGGACTTGACCGGGGACGATCTGGAGCTTTCCCTGTCTGTCTTTGAACGGGCTCTGGATGACAGCAAACTCCCAAAGAGGCAGTGGGGTTCGAGGCTGGCCCAGCTCCTCTGTGTGAAGACATCAGATGAGGATGATCATGAGTTGAGTTATGAAGCTGTAAAGTCAGATGTGAGGAAACAGGCGTGTTCCTTGGAGTATCAGCGGTGGAGCGACTTTAACAAGGTCCAGTATGATCCTCATAAGGGGGTGCGAGAGCTGAAAGTCGGGGTGGAGGAAGCAGCAAAGAAGTGGCTCCAGCCTGAAAAGTGCAGCTCTGAGGAAGTGGTGAGAAAAGTGGCCCTGCAGAAATTCCTCTCCCTTCTCCCACCAGATGCGATTGAGAAGACAAGCGAAGAGCAGCCGCGGAACATGGAGGAGGCTGCCATCATAGCGGCATCTTTCCTGGAAGATAACAGGGCTGAATGGAGCAAACACAGGGAGAGACAACATGATGATGCACATACTGACCATGGCTATTCAAGGGATTATATCAGCTCAAATGAGCTGAAGAAGCTGGACCCAGAGCCAGTCTTCCCATCTGATAGCCACAGCCTGGAAGTTACTGTTGGAGATGAGCATTTTGAAGAGGAAGAGTTTTCGGAAGCTATGCTTTCCCCATCAGCGGTTGACATAAAGCCAGTCCTAAATGCTGAAGACACACCATCCATTCGAAATGATTCTCAACTTTTGCTTCATGGACCCTGCTATAGTGGTGAATCGATTAAGTCTTCACCAAGGCGAGCTAATAAGAATGGGAACATAACCACaggaacaaaattaaaatgcatactTGATTGTCCAGACTGTGGTAGCAAGTTCAAGAGGTTTGACTACCTAAGAAAGCACATATGTACTCCTGGGCAGAGTCTGGGGTGCCAACACTGCGATCTGCGCTTCCCCTCCCTCTCCCAGTTAACAAACCACCTACGCGTACATCGGAAAATGTTGCACTGTCCTGAGTGCAACAAGGCTTTCAGAGACCGATTCAACCTCCGCTGCCaccagcgcacacacacagGCGAGCGCCCCCATATCTGCTCTGACTGCGGCTCTGCGTTTGCTCAGGAGCGAGGACTACAGGAGCACCGCAACATCCACACCGGCGAGAGACCCTTCCAGTGCCCAGTGTGCCGGAAAGGCTTCAGCCACAGCCGCACGCTTGCCAAACACGTGGTTGTCCACTCGGAAGCAAGGCCTTACATGTGCTCCGACTGTGGCAGAGCTTTTAAGATTAAAGACAACCTGCATCAGCATCAGAAGAAAATGCATCCCAGCAAATACTTGTGAACACACCCTATAGATGAAACACAGACTCCTGAATGAGCCATGCAGTTTACAAGCAAAAGTGGTACAATACACAGTTTATTTATACTGAGGTTTTTTTATGCTGCCAGTGACATTCAAGACCTCTCTTTTCACagatacagtgaggggaaataagtatttggacacttttgtttttgttatttaataaacttcCAGTGCAtgtatccacttcaaatttacacacataatgtcttttaactgtaaaagaaaatcaaacaagtacagacgtggacaaatttggtacccttccatgaaaaagaagaacccacaaCTATCTCTGAGATAACTTCTAATTGACAAACGTTAATGGCATCAATCACTGTTAATTCCATGTTAAACACAAATCAGACattacttttgatttttgattaaactgaatattttatataatgaaccaaatgaaaatgacatggACAAAAAAGATGGTACCCttaacttaatattttgttgcaccacCTTTAGCAGCAATCACTGCCAACAAGCAATCGCGGTAGTTTACAAGGAGACATCTGCATCGGGTAACAGatattttggcccactcttcctgagcaaactgctctAACTGCCTGACGTTTGAAGGGTGCCTTCTGCACCCTGCATCTTTCAGATTTTTCAACAGATGTTCAATAGGATTAAGATCAGGGCTCATAGAGGGCCATTTAAGAATAGTCCACAGcttttagctgtgtgttttgggtcattatcctgtTGGAGGACCCATGACCTGCGACTGAGggagagctttctgacactgggcagtatgTTTCTCTCCAGGATGCCTTGACAGTCTTGAGCTTTCATTGTGCTCTGCACAGATACATGGCCCCCTGTGCTAGatgcagcaaagcagccccaaaacatGACTGAGCCccctccatgcttcacagtaggtatggtgttcttttctttgaaagcttaatttttctgtctgtgaacATACAGCTGGTGTGACTTGTCAAAAAGCTCTAGTTTTGTTTCGTCAGTCCAaaggacattctcccagaaACTTTGTCGCTTGTCAACATGCATTTTAGCAAAGTccagtctggatttttttttatgtttttctttcaataatgGTGTTCTCGTGGGTCTTCTTCCATGGAGcccattgttgtttaaaatgtgacGGATGGTGTGATCAGATAGTGACCTACCTTGACCTTGGAGTTCAGCTTGAATGGCTTTGGATTTTTTCCTTGGCTTTTTGTCTACCATCCACACAATCCTTCTTATCAACCTGGGGTTGCGTTTCTTCTTGCAGCCACGTCCTGGGAGGTTGGCTACAATCCCATGGAccttatactttttaataatatttgcaactgtagtcacaggaacatcaaactgcttggagatggtcttGTAGCCTTTACCTTTAAGAGGCTATctacagttttctttctttgctcttCAGACAActctctcctttgctttctctggtccatgttcagtGTAGTGCACACAACGATACCAACCTAGACAGTGgcatattttctctctttaaatacGGTAATTGGCTGTTACAAAGATTAAAGACACCTGTGACTCTAATTACGGTTAAACAATTagtttgaaacatgattagaatgcaatgatttataataatttttttagcGGTACCAAGAAATCTGTCCAAGCTgtttaaattataaacaaaaagtcattgtaaaaaaattgtaatccaAAAAAGGTAATCCAAGGCACACTTCCAATttagattgtttaaaaaaaagcctttatttaAATGGCTATTTCATAGTAGAAATATTTTCtactaaatattttttctacaaaatatgtttttaaatatagtttttatATAGAAACATCAATAATCCACAAGGACTACAGGCTCTTCAGTATTGTTTGAACAGTAGACCACTTATCCTCCTTAGGAAACACTTAGGAAGCTTATCCTCCTGCTGAATTCATTCTTCAGTTAACAGAGTGGACATTTAAAAGACaatgtgtttctctttcaggaTCAACTTTACATTCAGGTACATGGCACAGTGATGAGAGCATGCTATGCACCAAATTATGCTGATTTATTTCTTGGTTTATGGGAGAATGGTTATGTTTACCAATCTGTGTATACCAGAAAAATGTTATGGTGGGGGCGGTACATAGACAACAGCTTATGTTTTTGAACAGGCACTAAGGATGAATTGCTTCTTTTTTGACCAcattaacaacaataatagAAATGTGAAGTGTTGATTATACACAAAGCAAAATTAGTTTTTTAGGCTTGATGATTTCAAAGGGAGAGGGAGGTTGTCTGTGTACTACTGTAAGCCAATGGATACAAAACACCCTACTAAAAGCTGATAGTTTCCATCTGAAATGGCTAAAGTGCAATATCCCTTTTGGACAATTTCAACGCCTTAGACGTAGTTGAGATACAGACAGTGAATTTCCAGTACAGGCCAGTGTATTAACAGAGTGTTTCACATGTAGCAGGATATCAGATAGACCTGATATGGACTACGCTATGAGGAGACATTTTCAGGTAGCGCATAATGGCAACCCAGACAGTCTCATAGTGGAAGCATTAGAAATAGTAGGTAAAAATGTATGAAGTGGAGATCACTTGAAATTGTTATTACAAAGGGAAGTGTTTTACATAACAGATGAAGGCAGTGGATTTTCCTGGTTTAATTGATTTTAGTCCCTTTCTCTGAAATCATTCATACACTTTGCTAATGCATCGTACTAAATTTGTGTGATATTTTTGCACCTTTTGTGTacatgtttctgtttatattcatttatcttcTCTCATTGTGGAACCATCTATTGGTGTCCTTTTAGACCAGCTCTAGACATACTCCCCCTAGTGGCATTTTGACACTAGTCACCTCTGGTTGAGCAGGTGTGTCTAATTTATCTGTTTTAGGTGAGAGCCCATTTGAGgcagttttgtgtttgtggCATTTCTACCGAAATGCGCGAGTCCATCccattatttctatttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176554 lncRNA downstream 334587 15377203 ~ 15377406 (-) True G149057
TU176480 lncRNA downstream 380561 15331207 ~ 15331432 (-) True G148992
TU176384 lncRNA downstream 573986 15136126 ~ 15138007 (-) True G148919
TU176385 lncRNA downstream 579496 15130776 ~ 15132497 (-) True G148920
TU176392 lncRNA downstream 583487 15127466 ~ 15128506 (-) True G148926
TU176862 lncRNA upstream 5676 15725251 ~ 15725901 (-) True G149301
TU176867 lncRNA upstream 31584 15751159 ~ 15752470 (-) True G149305
TU176874 lncRNA upstream 38709 15758284 ~ 15758501 (-) True G149312
TU176929 lncRNA upstream 178315 15897890 ~ 15898161 (-) True G149363
TU176930 lncRNA upstream 182865 15902440 ~ 15902642 (-) True G149364
XM_026918659.2 mRNA downstream 2814 15652205 ~ 15709179 (-) False ano3
XM_026918661.2 mRNA downstream 2814 15652205 ~ 15709179 (-) False ano3
XM_034307158.1 mRNA downstream 2814 15652205 ~ 15709179 (-) False ano3
XM_026918660.2 mRNA downstream 2814 15652205 ~ 15709179 (-) False ano3
XM_026918658.2 mRNA downstream 2814 15652205 ~ 15709179 (-) True ano3
XM_026918677.2 mRNA upstream 7368 15726943 ~ 15749724 (-) False LOC113529473
XM_026918679.2 mRNA upstream 7368 15726943 ~ 15749724 (-) False LOC113529473
XM_026918675.2 mRNA upstream 7368 15726943 ~ 15749724 (-) False LOC113529473
XM_026918676.2 mRNA upstream 7368 15726943 ~ 15749724 (-) True LOC113529473
XM_026918671.2 mRNA upstream 40051 15759626 ~ 15769464 (-) True slc17a6a
XR_004578773.1 other downstream 483961 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 623977 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 899288 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 1879104 13825897 ~ 13832889 (-) False LOC113529512
trnar-acg_1 other downstream 1921448 13790473 ~ 13790545 (-) False trnar-acg_1
XR_004578830.1 other upstream 270505 15990080 ~ 15992094 (-) False islr2
XR_003403120.2 other upstream 1033601 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 1333791 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 2034809 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 2486578 18206153 ~ 18214487 (-) False fnbp4

Expression Profile