RNA id: TU176798


Basic Information

Item Value
RNA id TU176798
length 1924
lncRNA type sense_over
GC content 0.40
exon number 4
gene id svip
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15721278 ~ 15725091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTAACACTGGCTTTAAAATTCAACAATATCATACATTAAATATGTACTAAACAAGGTCGGATACTATTTTTCCAAATGTCGGAGCGTATGAAGAAGAGGTCTGGTTGGAATTCATTGGATTTTTAGTTCCTTAGTGCTATTTTAGTATGTAATAGCTGCAGCTAGCGGGCATTTGTTTACATTAGCTAACCCAGTCGCTACATAGAGTTAGCGAGCTAGCATTCCTAGCGTTTTCAcagttttgtacatttattttcgCACAACCGAATTGTTTTCAGTGACAGTCGCGCATTGCTATAGTTGCTATTGAGCTACGGTGTTTAGCTAAGTGTTGGCATTAATCTTGGTGGCTGTTGAAAACTTTTGCGGACTGTTTGGCGCTGGGTTGGGGATCTGCTGCCGTGTGCAGTATGGGGATGTGTCTGCCCTGCCTGGGTGGAGCTGCGGACGACGTCGTAGTAACTCCCGATCCGGAAACAAAAAGGCGACAGCTGGCAGAAGCTGCAGAGAAGCGACAGAAAGAGAGCACACAGAGAGGCATCAAGAACCCAGAAgcagtggaaaagaaaaagaagaagcaagAGGAGATGGAAAAGCAGGCGATGAGCACATCACCATCTGGAAGCGGAGGACTTAGGtGGCAGGTTGGCTAGCACAAGATGAAGAGAAGACAACCGGTGTCAACTCTGAGGCTCAGCCCGCATGAGCAGTGTTAACCATCCAAATGAGAaggctgtatttttttctttcttgaaatcTAAGCTTTTTGGGTCGGTGTTTGTAGCATATAGACATTTTGCCAAGCTTCCTGCAAAGGACATCTGATAGGATGGAGCTCTTTGGAGGTCACGCTTACTTTATCATGCTGAGATGCAATGTGCCAACCAGCGGAACACAGACATCACCAAAGCAGCAGTGTGTCTTTTAATACACTTGTTTATGCATCACTACTGAGAGACATGGCAAGTTGACAAATCATCCGACAGGATGCTAATGAAGAAGGgtcctttattttttaaatagtataaACGGTTGAGAGGAATGCAACACTAGtacacatttatatcacattttgtAATGGATTGATGTAAGGCATTTGGCACATTCTGTTAGCCACACTCATATATTTTAGAGTTAAGTTATACTTTGCTACGTTTTGGTTTGAGGACTATAGTGCAATATAATTATTTGTTCTGTCAGGATTGAACAGAATGTTGAAGCTAAGAATGAATACTCATCTATTTGATATTTACCATTACAAACCCATCTACAGAACAATATTAGTAATGAATGTTCTTGTTTTATTATACCGGTGGTAAACGAAGGTCACTGGTTATTCTTGTGTTGTGTTGATTTACTCAGATGTAGGGCAGCATATTATGACCCAACAGCCATAATAGTGTCAGTTCCCTAGTGTGTGAAATAAGGCAGTGTCATAGTTTAGCTTGCTCAGCTATAGTGCTCCTCTCATGTGTAACCGTCTTACTGTGTCATTGAAAGCCAGGCAGAGAACTGAGCTGTAGTTTTTCTATTAACATGAGATTTTTAAAGAAAGGCTTATAAAATATCTTTACTACCAAAGCTCAATGTGCTTGCCGTTTTTCCCCAAACCCTGAAATCCCAGCCCTCACCATCTGAAGGGTATAAGGCCCCTGTGTTAGTTTAATGGGCTTGAATAAATCTTCATTTCATCcgattctgattttttttgtttgataattctgtacagacacacacatagactaGAAACACAGTAGAAAATTACTCAAGTTAGGAAAATTACTTGAataattactttacaaattatttttttatatgtctGCAATTGACACACctaatctgaaaatgttttatatctGAGGAATGCCTTTTTGAACAATTCTGTTAACTACCCAAGTgagctatgctgaagtgaacacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176794 lncRNA upstream 9431 15711013 ~ 15711917 (+) True G149248
TU176631 lncRNA upstream 68664 15563306 ~ 15652684 (+) False slc5a12
TU176640 lncRNA upstream 151861 15567836 ~ 15569487 (+) True G149131
TU176588 lncRNA upstream 237445 15483074 ~ 15483903 (+) True G149091
TU176586 lncRNA upstream 239320 15481687 ~ 15482028 (+) True G149089
TU176815 lncRNA downstream 29574 15754665 ~ 15754912 (+) True G149268
TU176828 lncRNA downstream 46747 15771838 ~ 15818368 (+) True G149276
TU177010 lncRNA downstream 299753 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 302516 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 529593 16254684 ~ 16255314 (+) True G149552
XM_026919330.2 mRNA upstream 68717 15644987 ~ 15652631 (+) True slc5a12
XM_026919331.2 mRNA upstream 86358 15631055 ~ 15634990 (+) True si:ch211-87j1.4
XM_026919335.2 mRNA upstream 100929 15609440 ~ 15620419 (+) True clpxb
XM_026919061.2 mRNA upstream 115611 15577183 ~ 15605737 (+) False lrrk2
XM_026918674.2 mRNA downstream 26048 15751139 ~ 15752526 (+) True fancf
XM_026918826.2 mRNA downstream 82899 15807990 ~ 15822591 (+) True LOC113529564
XM_034307166.1 mRNA downstream 82899 15807990 ~ 15822591 (+) False LOC113529564
XM_026919874.2 mRNA downstream 107088 15832179 ~ 15841507 (+) True sigirr
XM_026919672.2 mRNA downstream 149772 15874863 ~ 15882172 (+) True hexa
trnar-ucg_5 other upstream 1900686 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1946165 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2368095 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2804094 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4417402 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 82899 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 82899 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 82899 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 316084 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2109146 17834237 ~ 17842535 (+) True G150589

Expression Profile