RNA id: TU176815


Basic Information

Item Value
RNA id TU176815
length 248
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G149268
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15754665 ~ 15754912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAACTCAATAAAGGGCCAAGGTAGTAGATTGATTTGACTTGCAGATCGTGAGAACAGTGAGATCTGTGACTCATGTCTGTTTGGCTTCACTGTAATTAGCAGCCGCACTGCATGTCTAGTACCGGCTTATCACTCTTCAACACTCTTCTATATATTTACCCAGCTTCACACATCACTGGATGGAGtgtcagacagaaagaggacaggaactaaaaaaaagtcaggaaaTGGGTGGAAAGGGAAGG

Function

GO:

id name namespace
GO:0021532 neural tube patterning biological_process
GO:0007498 mesoderm development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176798 lncRNA upstream 29574 15721348 ~ 15725091 (+) True svip
TU176794 lncRNA upstream 42748 15711013 ~ 15711917 (+) True G149248
TU176631 lncRNA upstream 101981 15563306 ~ 15652684 (+) False slc5a12
TU176640 lncRNA upstream 185178 15567836 ~ 15569487 (+) True G149131
TU176588 lncRNA upstream 270762 15483074 ~ 15483903 (+) True G149091
TU176828 lncRNA downstream 16926 15771838 ~ 15818368 (+) True G149276
TU177010 lncRNA downstream 269932 16024844 ~ 16026512 (+) True G149427
TU177011 lncRNA downstream 272695 16027607 ~ 16028019 (+) True G149428
TU177169 lncRNA downstream 499772 16254684 ~ 16255314 (+) True G149552
TU177191 lncRNA downstream 573344 16328256 ~ 16328539 (+) True G149574
XM_026918674.2 mRNA upstream 2139 15751139 ~ 15752526 (+) True fancf
XM_026918680.2 mRNA upstream 29799 15721292 ~ 15724866 (+) False svip
XM_026918681.2 mRNA upstream 30946 15721278 ~ 15723719 (+) False svip
XM_026919330.2 mRNA upstream 102034 15644987 ~ 15652631 (+) True slc5a12
XM_026919331.2 mRNA upstream 119675 15631055 ~ 15634990 (+) True si:ch211-87j1.4
XM_026918826.2 mRNA downstream 53078 15807990 ~ 15822591 (+) True LOC113529564
XM_034307166.1 mRNA downstream 53078 15807990 ~ 15822591 (+) False LOC113529564
XM_026919874.2 mRNA downstream 77267 15832179 ~ 15841507 (+) True sigirr
XM_026919672.2 mRNA downstream 119951 15874863 ~ 15882172 (+) True hexa
XM_034307515.1 mRNA downstream 133195 15888107 ~ 15890739 (+) True nr2e3
trnar-ucg_5 other upstream 1934003 13820590 ~ 13820662 (+) True trnar-ucg_5
XR_003403080.2 other upstream 1979482 13761334 ~ 13775183 (+) False ces2b
TU175114 other upstream 2401412 13349326 ~ 13353253 (+) False zgc:172145
TU174750 other upstream 2837411 12916919 ~ 12917254 (+) True G147542
XR_003403100.2 other upstream 4450719 11295128 ~ 11303946 (+) False hrh2a
XR_004578669.1 other downstream 53078 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other downstream 53078 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other downstream 53078 15807990 ~ 15819573 (+) False LOC113529564
trnav-aac_18 other downstream 286263 16041175 ~ 16041247 (+) True trnav-aac_18
TU178368 other downstream 2079325 17834237 ~ 17842535 (+) True G150589

Expression Profile