Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU177010 |
| length | 786 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 2 |
| gene id | G149427 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 16024844 ~ 16026512 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006399 | tRNA metabolic process | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU176828 | lncRNA | upstream | 206476 | 15771838 ~ 15818368 (+) | True | G149276 |
| TU176815 | lncRNA | upstream | 269932 | 15754665 ~ 15754912 (+) | True | G149268 |
| TU176798 | lncRNA | upstream | 299753 | 15721348 ~ 15725091 (+) | True | svip |
| TU176794 | lncRNA | upstream | 312927 | 15711013 ~ 15711917 (+) | True | G149248 |
| TU176631 | lncRNA | upstream | 372160 | 15563306 ~ 15652684 (+) | False | slc5a12 |
| TU177011 | lncRNA | downstream | 1095 | 16027607 ~ 16028019 (+) | True | G149428 |
| TU177169 | lncRNA | downstream | 228172 | 16254684 ~ 16255314 (+) | True | G149552 |
| TU177191 | lncRNA | downstream | 301744 | 16328256 ~ 16328539 (+) | True | G149574 |
| XR_004578685.1 | lncRNA | downstream | 312078 | 16338590 ~ 16341963 (+) | True | LOC117597940 |
| TU177372 | lncRNA | downstream | 413194 | 16439706 ~ 16440054 (+) | True | G149722 |
| XM_026919794.2 | mRNA | upstream | 10689 | 16009837 ~ 16014155 (+) | True | neil1 |
| XM_026919523.2 | mRNA | upstream | 16021 | 16005670 ~ 16008823 (+) | False | commd4 |
| XM_026919524.2 | mRNA | upstream | 16021 | 16005686 ~ 16008823 (+) | True | commd4 |
| XM_026919989.2 | mRNA | upstream | 44599 | 15968543 ~ 15980245 (+) | True | stra6 |
| XM_026919885.2 | mRNA | upstream | 119515 | 15897676 ~ 15905329 (+) | True | LOC113530122 |
| XM_026918866.2 | mRNA | downstream | 19063 | 16045575 ~ 16048154 (+) | True | si:dkeyp-73b11.8 |
| XM_026919968.2 | mRNA | downstream | 22572 | 16049084 ~ 16060168 (+) | False | usp3 |
| XM_026919969.2 | mRNA | downstream | 22879 | 16049391 ~ 16060168 (+) | True | usp3 |
| XM_026918890.2 | mRNA | downstream | 34576 | 16061088 ~ 16066983 (+) | True | fbxl22 |
| XM_034307478.1 | mRNA | downstream | 66560 | 16093072 ~ 16106147 (+) | True | LOC113529940 |
| XR_004578669.1 | other | upstream | 202253 | 15807990 ~ 15822591 (+) | False | LOC113529564 |
| XR_004578670.1 | other | upstream | 204688 | 15807990 ~ 15820156 (+) | False | LOC113529564 |
| XR_003403067.2 | other | upstream | 205271 | 15807990 ~ 15819573 (+) | False | LOC113529564 |
| trnar-ucg_5 | other | upstream | 2204182 | 13820590 ~ 13820662 (+) | True | trnar-ucg_5 |
| XR_003403080.2 | other | upstream | 2249661 | 13761334 ~ 13775183 (+) | False | ces2b |
| trnav-aac_18 | other | downstream | 14663 | 16041175 ~ 16041247 (+) | True | trnav-aac_18 |
| TU178368 | other | downstream | 1807725 | 17834237 ~ 17842535 (+) | True | G150589 |
| TU178369 | other | downstream | 1807725 | 17834237 ~ 17842535 (+) | False | G150589 |
| TU178370 | other | downstream | 1807725 | 17834237 ~ 17842535 (+) | False | G150589 |
| XR_004578809.1 | other | downstream | 2648498 | 18675010 ~ 18683428 (+) | False | rfwd3 |
