RNA id: XM_026918913.2


Basic Information

Item Value
RNA id XM_026918913.2
length 3081
RNA type mRNA
GC content 0.43
exon number 14
gene id acsbg1
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16141119 ~ 16228334 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGGAGGAGGGTCATCGTTTCCTCATTAATACATGAACAGGAAGGCAGCTGAGCAGCACATACCAGAAGGACAGTCAGTATGATAAGCAGTGGAATATCTCAAGAACCATCCTGCAACAAAAATCAACACAGAGTCAAGGAGAAACAACACAGCTTAGGGCGTTCACCGTTGGGGCTCATGACAGACTCCAAAAAGAAGGGAGAAGAACAGGCTACAGCACAGAAAATTTGTGTGGAAGAGTTTTTAGCAGGGAAAGCTCTGGCTCCAGCCCAGTGCCTTTGGACCACAGAGGCGAGTGGATCAGTGCAACTGCGAATAGATGACCTCTGTCCACAGGAGCCAATCACAGTCCATCAGATGTTTATGACCTCAGTTCAGAAATATGGCAATTTGTTTGCCCTGGCAACTAAAAGAAAAGGCAAATGGGAAAAGATTACATTCTCTGAATACTACCAGTGCTGTCGGATGGCTGCCAAGAGCTTTCTGAAGTTGGGGCTGGAACGTTTCCACAGTGTGGCGATCTTGGGATTCAATTCAGCAGAGTGGTTCTTTTCTGCCGTAGGAGCTATCTTCGCAGgGGGTATAATGACAGGGATCTATGCCACAAATTCTCCTGAAGCGTGTCATTATGTGGCCAGTGACTCAAGAGCAAATATTATTGTAGTGGAAAATCAAAAGCAGCTGGATAAAATTTTGCAGGTAAAGGATAAACTGCCACATCTGAAAGCCATTGTGCAATATTCTGGACCCTTGCTGGAGAAACTGCCCAATCTGTATTTGTGGGAGGAGTTCATGAGTCTGGGCCTGGATATTCCAGACAAAACccttgatgacatcatcagtagTCAGAAAGTCAATCAATGCTGTGTTCTTATCTACACATCAGGAACCACAGGCATGCCAAAAGGAGTGATGCTCAGCCATGACAATATCACATGGACGTCTCACCATGCGAGCAGGGCTGGAGGCATGCAGCCTGCAGAGATAAAACAGGAATCCATAGTGAGCTACCTCCCCCTCAGCCATATTGCTGCTCAGATCTATGACCTGTGGACAGGGATTCAGTGGGGCGAGTTAGTCTGTTTCGCACAGCCTGATGCTTTGAAGGGCAGCCTGATCGAGACTTTGAAAGAGATCAACCCTTCATCTCATATGGGAGTCCCACGTGTTTGGGAAAAAATAATGGAGAAAATAAAGGAGGAGGTATCACACTGTGCATACATAAAAAAGAAACTGCTGACCTGGGCCATGTCTGTTGGTTTGGAGGCTAATCAAAGGGATGAGGAGAAATCAATTCTCTTCGCCCTAGCAGATGTGCTGGTCCTGGAAAAACTTCGTACTGAGCTGGGCCTCTCTTATTGTGAGAAGTTCTTCTCTGGTGCAGCTCCTCTTGGAAATGACACAGTCCAGTTCTTCCTTGGTCTCAACATTAAGTTATATGAGGCTTATGGCATGAGTGAAAGCAGTGGGCCTCATTTTATGTCTGGTCCAAAAGTTCACAAGCAGTCAAGTTGTGGCAGGGTGGTTCCTGGCTGCAGATATAAACTAGTTAATGTTGATAGTGATGGTATTGGGGAGGTGTGCTTTTGGGGTCGGAATGTCTTTATGGGGTATCTCAACATGGAGGATAAAACCAAGGAAACATTGGATGAAGATGGCTGGCTGCATTCTGGAGACTTGGGCAAAACAGATGAAGATTTCCTTTACATTACTGGAAGGATAAAAGAGTTGATAATAACTGCTGGTGGAGAGAATGTTCCTCCAGTTCCTATAGAGGATGCTGTGAAAAAGGAGCTGCCTATAATCAGTAATGCCATGCTAATTGGGGACAAGAGGAAGTTTCTCTCAATGCTGCTCACACTTAAGTGTGTCACCAATGCTGAAACCATGGAGCCCACCGATGACCTTAGCACTGACACTGTGGAATACTTTCAACAACGTGGCATCCAGGCAACAAAGGTTTCCGATGTAATTGGAGGGAAAGATCAAGCAGTGAACCAGGCCATTCAGGAGGGCATTGACCGGGTCAATGCTAAGGCCAACTCCAACGCCCAGCGTATTCAGAAATGGACAATTGTAGGGAAAGACTTCTCAGTCTCTGGAGGAGAGCTAGgcCCAACAATGAAACTGCGACGACCGTTTGTCCTGAAGAAGTACCACAATGAAATAGAAAATTTCTACAGGGAATGAAGAAATAACTACAACTAACCAGGCTAGACCAGTGGTGTCAGTAGCATTCAACCTCACTGATCACACCCAATTCAGTTAGTTCTTCAGCTAATTACCAGTTTGGTCTGTTAGAAAATGGTAAACAAAAATGTCTGCATATATCTACATCATGCCTGTGACCGGAGTCTGACACCCAGAATCTAGAAACATCAAATTCttgaaactgtatttaaaatcaTGCTAGTCAGACCATCTTCCTCTTAGTGAAACCTCATCTTTATGGAGTCAGAAGATATTTGTTAGATATACTTAAATTACAGGGAGGAATAATGCTCTAATCAATTAGAATACATTTGGACTGTCCTTGGGTAATTGATCTTTCCTACACAGGAAAGCATGTGCAGTGTAATACTGGCTATGAGAATTAGATACATTTGCATTGCAGTGGGAACACATCGTTTCTCCTTTGACAGTCAGGAACAGCTGTTTAAATCCTGGTGAATCATGATGAGCTTTGGGGCTCTGGCTTTCTCAGGCATGGAAATCATGCATCTGAGATCATTGTCTAATATACTTATAACATCATTTAATATACCCTACTTAAACTTACCATTCTATATATCTAGAAAATAAAAACCAGTGAAACTTATATTCAAAATATCAGCaactttaatgtatttaatcTCTTAAATTGACCAACGTTTACGCCTGCCATTAACCCAGTGACAAAGTGGTTATGATAAAATGTGAGGGACCAGAGAATATCTCCAGTCAATAAATAAAGGATATCTTGGGCTATGCACTTCAtttgacagagaaaaaaaaacacattttacacatctATACCGTTGACAAGTTTTAacagttctcttttttttgtttggaggtgaaataaacatgaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K15013 ACSBG; long-chain-fatty-acid--CoA ligase ACSBG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177091 lncRNA downstream 124201 16093072 ~ 16095175 (-) True G149495
XR_004578675.1 lncRNA downstream 126446 16068429 ~ 16092930 (-) False LOC113529609
XR_003403074.2 lncRNA downstream 126446 16068429 ~ 16092930 (-) True LOC113529609
TU176932 lncRNA downstream 315474 15903692 ~ 15903902 (-) True G149366
TU176930 lncRNA downstream 316734 15902440 ~ 15902642 (-) True G149364
XR_004578686.1 lncRNA upstream 2283 16230614 ~ 16231809 (-) True LOC117597941
TU177252 lncRNA upstream 5098 16233429 ~ 16238108 (-) False G149631
TU177268 lncRNA upstream 20830 16249161 ~ 16251085 (-) True G149643
TU177277 lncRNA upstream 26316 16254647 ~ 16255486 (-) True G149649
TU177254 lncRNA upstream 81559 16309890 ~ 16317926 (-) True G149632
XM_026919721.2 mRNA downstream 20261 16180917 ~ 16199115 (-) True cib2
XM_026919337.2 mRNA downstream 53377 16141596 ~ 16165999 (-) True tbc1d2b
XM_026918887.2 mRNA downstream 78472 16122648 ~ 16140904 (-) False dapk2b
XM_026918888.2 mRNA downstream 78472 16123400 ~ 16140904 (-) True dapk2b
XM_026918886.2 mRNA downstream 78477 16121657 ~ 16140899 (-) False dapk2b
XM_026918917.2 mRNA upstream 7812 16236143 ~ 16238157 (-) True rps27l
XM_026919995.2 mRNA upstream 23013 16251344 ~ 16254496 (-) True LOC113530180
XM_026919070.2 mRNA upstream 28179 16256510 ~ 16262939 (-) True LOC113529693
XM_026919996.2 mRNA upstream 37231 16265562 ~ 16267986 (-) True trpm1b
XM_026919384.2 mRNA upstream 97611 16325942 ~ 16362375 (-) True otud7a
XR_004578830.1 other downstream 227282 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 991344 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1131360 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1406671 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2386487 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 524845 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 825035 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1526053 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1977822 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 2076307 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile