RNA id: TU177254


Basic Information

Item Value
RNA id TU177254
length 3712
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G149632
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16309890 ~ 16317926 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGCtgattatttatgcatttattttcaaatgtaaacTTCACTATTTCATGCATACAAGTTGACACATACATTATTTGACAAATTCTTGTTAATTCTCATATTTGCATAGGACAGAGTCACAATATATTGTCtagaatgtaaaaaataatgtcatAAAAAGATACAGCAGAGCAACCATGACCAGCAACATTAAGAGTCGGTATAATTCATGGAACTGTACAACTGTAATACTTCACTGTAGTGATTTGGTTgattgagcaaaaaaaaaagaaaaaatggtgGTGAATGGCAGGTTTCGAATGAGGTCATGACGAGAGGAACTGGCCATAGTTGAAATATGAGTTATTTTGTACAAAGCGCTTTATAGCCGCgctgtagtcacaggaacagGCATTGCATGGTGATAGAAAATAAAGACTAATACATATATCAGGAAGGCAAGCCAAGTATACACATAAAGCCTGAAGGACAGCTTGAAGCATCTATGACCTCCCGAAAACTCTTTAACCTCtgtatttgttcattttctgaTTGGAGATTCATGGTCAGTACAAAAGAATGTGCATTGGTGTGCAAAAGCACAAAGAAATTTAATAATTAGTTGTGGCCATTGaacatcatttattaatgtCACTAATATCTATAGATTTTGGGTATCCAGCTACAAGTGAATCCTCCCATATAGAGAGAAGAAGATGAGAAgccatgaagaaaaaaaaaacctatttgaAGACAGTCAGCTCTTTTCTATTCTGTGTGAAATATCATAGCTATTGGGCTTCATAGATGTTTTCAGTAAAATAAGTTTACTGAGTGCACATCATAAAAAGAGGAGCGAAGGTATGGGCGGTTCTGAGTTTGAGCCTCCTATAGTAATCCAGTCATGCGTGCTCATTAACAGCTGCTACGACAGCAGCCTTGTCCCTGCTGACACCACTGGACGCTGCGTGCTTCCAAAAGGCtagttgtgtgtttgagtctgaCCATGCAGATTAAGAGAAGACCAAACTGACACAAATGACCACATGCTTTAAAAGCATCAGTCTCCATCAGTGACCAAGCGTAAGAGCATGACCGTATTTTCCAAGCCTTCATGTACAGTGAAAATACACAGTTTAATCCCccaaatttgaaatattttgagGAATTAATGGTATCAACATGACGCCAACAACGAAAACATGTTTTTCCCCtggtaaacatttacatttttatgtggaGGATGTTTCCAGTAATTCCTAAACTGTGCTAACACTTGATGTCAGGGGGTTTCCCTCCCAGGCCACACAATTACTGAATGGCATTTACTGCCAAACATGGATTCTTTGGAGAAAAACTAACCTGCACAAGCACAGTGCTATTCTACCTGTGAACACCCTTCATTCTAGGGTTATATTGACCAGAAGAACATATAGGCAATAATGGGCAAACAACAGTCTACATAAGTCTTCACAGATATGTGTTACTGGGACAATTAACACATCGAGTGAGCCATTCGGTTTACCGTGGCTTTGTTCATTACTCAAAGGGTCTCTTTTGTTTCCTTAACTTCCTGGCAGACACATTTGGGAATAACCCAATGAGTCATATGATTTGAAggataaacattttttttttcctttcagttgAAAGCACTCTAATGTGCTTTGTGAAATGGCAGCCTGAATTCCAGCTAATGCAAATGCAAACATCCCCAAATTCATCCACCCTAGAAGTCTTTGGTGACAACCCAGTGAGGCTCTAGTTACAGGAACCCAGTGCTGAACTTCAATTAATTGTACAGTGTGGGTTAATTTGCTTGATGGCTCAAGTGGCAGGTGCGTTGTACCACTTTGGCCCGTGTTCCATGCAACAGTTCCATGGGCCTAACCCCTGTTTTGCATGTCTGTCTTTCACTTTTCATGGGAATGccgataaaataaaatgcacaccTGCGTGTACACAAGCAAGCAGACTTGCAAAATCCCTTTTATGAGAGGCTCAGGGTTTACTGCTTATCCTGTCCCAACATGAATGGTTGTGTCTATTTTGTCCAGTAGGCACCATTAAATATAGTATAAGCGCATTgccaaaacagcagaaaaaaagtaTGCAATGTTAAGAAAAGTACCCAAATTAACTAGTCACAAATGTATTTCAGTAAAATACATCACAGTCcaaaacagaacataaaataaatacataaaagtaATGTAGCTTCTATGCATTGGTTTGATATAAGCAGCACATTTACAGCAAATGAAATTGCAATCCTTTGGAATGGTTGGGTTTTCACTTCTgattaatataacaataatagcATCCAAGAGTTTAGGATATTTAACCATGTATGTTCTAAATTGTACAGCATAAGACAAATTAAGAAAGCAATATAATCAGacaaaaaccaacataaagctACATTAATGTCAcaccaaaaggaaaaaaaagagttaaacTTAAGAATACTTGGGTGTCTAATGCACATCATTCAGTCCTGTACACGTACTTAAAAACACATCACTCATAGAAAACTGTACAAGGTTATTTAGTTAATGTCACCTATTATGGAATATGCATTAATTTTCTAAGGGTTTCTCCTGGAATTACATATAATAGTGGTTTAAATctgatttcaaaatattttttttaatcttcatgcAGATTTCAATAAGTCAGATCTAGACCAAAAAATTGGATTTATACCACTATAACATAGCCTTTAAAATGAGGACCTATCCAGAACAACCCTCACAGTTTTGTGGGAAAAAGAGTCTTAGAGATAgcaatgttaaaaacaaaaagagttACTTCCAGTCTCAATACACAATGACTTCCACTCCATTCCAATCCCTATGCTGGGGTACCACGTCTTACAGCCAGATCAGATATTGAGTTTTTATGACTGTTAAACCTAGTACTAGTTTCACCTGATGTGAAcaccaataaaaataaaaaaaaacaaaaggaagagtgcaatttttttgttgAGTGTAAGGctgttttatgtatgttttctCTTCATGTTCATTCTTTCAAGCTAACAAGGCCATCCCTGAGCAGGGCACAAAATTCAACCCCTGTTGAATTTCAGAGTAAAGTGATGCTTGTATTGTGCAGTCAGTGTGAATAttaaaggagaagaaaagaaaaacaactgtCTAGAatcctgaggtgtgtgtgtgcgccactCCCCCTAACCcgtcataaattaaaaaaaaaaaaaaaattgcactacAGGAAGCAGTTATGTACAGTAGAGTACACCACAGCAAGCGAAAGGATTAGCAAAGAGAGGTGGCGGCTAACAAGTGTGCAACATCACTACTTTTGACAGAAAAGaatttgagtttaaaaaaaacagcactgagcTGCAGGGGGCAGAGGGCGGAAAAGTGCAGGCGGGTTTAAGGCGAGTTGGCTGGGCTGAGTGTGGGGCTGAGTGTGGGGCTGGAGGCATCCGAGCGGCTGTAGTCGCTCAGCGATCCGGGTCGTGTGCTGCTCGCTGTGTTCAGCGTGCCGCTGCCTCCTTGCTGCCTCTTCAGCATGGCTGGCTGGAAGTCGGAGTGGCGGCGAGCGTGCTTCATCAAGTGGTCGCTGCGCATAAAGCGCTTGTCACACAGTGGGCAGCCGAACTTCTTTTCTCCCGTGTGTGTGCGGTAGTGGCGTGCCAGCTCGTCCGAGCGAGCAAACTTCTTACTGCAGTCAGGCCAGGTGCACGGAAAGGGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177277 lncRNA downstream 54404 16254647 ~ 16255486 (-) True G149649
TU177268 lncRNA downstream 58805 16249161 ~ 16251085 (-) True G149643
TU177253 lncRNA downstream 71782 16180906 ~ 16238108 (-) True G149631
TU177366 lncRNA upstream 104740 16422666 ~ 16424604 (-) True G149718
TU177505 lncRNA upstream 142865 16460791 ~ 16461045 (-) True G149836
TU177511 lncRNA upstream 178245 16496171 ~ 16498461 (-) True G149841
TU177528 lncRNA upstream 295058 16612984 ~ 16614416 (-) True G149854
TU177779 lncRNA upstream 701030 17018956 ~ 17019183 (-) True G150089
XM_026919996.2 mRNA downstream 41904 16265562 ~ 16267986 (-) True trpm1b
XM_026919070.2 mRNA downstream 46951 16256510 ~ 16262939 (-) True LOC113529693
XM_026919995.2 mRNA downstream 55394 16251344 ~ 16254496 (-) True LOC113530180
XM_026918917.2 mRNA downstream 71733 16236143 ~ 16238157 (-) True rps27l
XM_034307238.1 mRNA downstream 81556 16219376 ~ 16228334 (-) False acsbg1
XM_026919384.2 mRNA upstream 8016 16325942 ~ 16362375 (-) True otud7a
XM_026918976.2 mRNA upstream 125529 16443455 ~ 16458395 (-) False bnip2
XM_026918977.2 mRNA upstream 125529 16443455 ~ 16458395 (-) False bnip2
XM_026918974.2 mRNA upstream 125529 16443455 ~ 16458395 (-) False bnip2
XM_034307284.1 mRNA upstream 125529 16443455 ~ 16458395 (-) True bnip2
XR_004578830.1 other downstream 317796 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1081858 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1221874 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1497185 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2477001 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 435250 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 735440 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1436458 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1888227 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 1986712 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU249782 True 744 lncRNA 0.41 3 CI01000051 4085054 ~ 4086036 (-)
tiger barb (Puntius tetrazona) TU249782 True 7142 lncRNA 0.40 2 NC_056723.1 11432645 ~ 11441115 (-)
mexican tetra (Astyanax mexicanus) TU249782 True 743 lncRNA 0.48 2 NC_035917.1 13676337 ~ 13677778 (-)