RNA id: TU177268


Basic Information

Item Value
RNA id TU177268
length 1901
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G149643
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16249161 ~ 16251085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttaaacaattatttgcCTACCAGATGAGCAGGCTGTTTAAGAAACATTTCCTTTCTGAACTGATAGATGGCAGTACATTGAACAATCACAAAGACCAATAAACTCAGAAGACAGCTGCAGAAATGTATGGCCTTTGATCACACTGATCACAATGGTCCCTTCTGAACACCAAGGCTGGAATAATAATGCTACATTTGCTTGTATTTTATGGTAAGCGCTAAAGCAAGAGTTGCTACTGCAGTTTCTGAGAGAGTAAAACACTGACTCTTGTACAGGCTTTTCCAAGGCCTCAAGTCTTGGGCTGGaaagaggaaacaaaaaaaacttagcAAGAACATTTTATTGCTGACTCGATCTGTCAGACTATTTTTGAAGCTTTCCTTCTTCTGAAACATTAGTGCAACTGAAACACTTCGATACTGTCTATTTGCACACACTCAACCTCAAATTTCAACTACATTAAGAGCATTGGCACCAGTGAAATAAATGCTACTTATGCCATGTAACTGGGTACAGAATACGTAGATATTGACATGAAttcacccaaacacaaacagacacacaacacacagcaacacataACTGCCTATTTGATAATTGTATTTGCCTTCAAAGAGCTACTAGTAATAGAGATCACAGGTTATGACATGTGTAAACCAAAAGTACTTTGGGCttttaaaaacagcaataaGAATAGGTGGTATTTTGTTAATATACATAGCAGCAAGAATGCCAACATGTAAAATTAATAGCACATTATACATACAACAATAAAAGCATGCATTAGTGGCTTTCCTATACATTcatatacagatattttaaaTCATTCCTCAAAAGTCAATATCAAACATGCAAACCTTTGCCAATCACACAAGATGTTTTTTAAGGTGAATTAATTAAACAGAGATACATGTAAATAACGCTACCCTTCTTAGCATGCAGGACCAAAGTCcagcacagtttggtgatttccctgCTTTCACACGATGACTTCATTAACTGATAAGTCCAATTGGGTGTCTTTCAACAGGAAAATCAGCAAGCTGTGTTGGACTGTCAAACAGACAGGACCACAGCTGGGACCCCTGGCCTAACATGTGTGCTATATACGTCATGTCTCTGTTTTGATTGGCTGCTGCTTTACAGACACATGGACAGACTGTACATGTGTACTTTTACCCATCATGCTCTTCAGCTGTCATGTTCTATATTTGATTCTCCACATTGCAGGGGAGTGCAGGATCTCTGTCAGTGCTATACATGGTTATGTGCCTGTGAGACAAACCCAGAGACATtttcctatacacacacacacatatatatatatatatatgtatattctaATTCCACCtccttttaaatctttaaaggtGCCCTTTAATTATACACAATTTGCTAGCCATACTATAGATTTTACAGATAATCATCTGCCCATAAACAATGTGTAATGACAGTGTAACACTGTTATGCTTATAAAAgctttataaaatatgaataaaggCTCTATAAAAGGAATAATTCAAGCTTtgatattataaaaaaaattgacagtCAAACCAAAACATGTGCCGTGATAATCACAAAAAGGCCAAAAGAAACAATAAGACATTTCACAAACTAGGTACTTCAAACCCCTCCAGTATCCTTTGTGCCAACTCGCCGGTTGGTCTGTATGAACAGGAGTCTCCCTGTTCATTAAGAACGTGAGTGCACGCCTCTCAGTAGAGGTTCACATGACCTTCCATACCAGCTGATTCTGCAGCTAGAGAGATCAAGTCCATAGTTGCATTCCAATCGCTAGAGTCCATTATATGAGTGTGCACCTGAATATGCTGTGCTTCTTGGAACGCTTCTCTGTGATCTTAATTGGTGCCCCACCTTCTGAATTGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177253 lncRNA downstream 11053 16180906 ~ 16238108 (-) True G149631
TU177252 lncRNA downstream 11053 16233429 ~ 16238108 (-) False G149631
XR_004578686.1 lncRNA downstream 17352 16230614 ~ 16231809 (-) True LOC117597941
TU177246 lncRNA downstream 20868 16224977 ~ 16228293 (-) False acsbg1
TU177243 lncRNA downstream 29539 16141119 ~ 16219622 (-) False acsbg1
TU177277 lncRNA upstream 3562 16254647 ~ 16255486 (-) True G149649
TU177254 lncRNA upstream 58805 16309890 ~ 16317926 (-) True G149632
TU177366 lncRNA upstream 171581 16422666 ~ 16424604 (-) True G149718
TU177505 lncRNA upstream 209706 16460791 ~ 16461045 (-) True G149836
TU177511 lncRNA upstream 245086 16496171 ~ 16498461 (-) True G149841
XM_026918917.2 mRNA downstream 11004 16236143 ~ 16238157 (-) True rps27l
XM_034307238.1 mRNA downstream 20827 16219376 ~ 16228334 (-) False acsbg1
XM_026918913.2 mRNA downstream 20830 16219376 ~ 16228331 (-) True acsbg1
XM_026919721.2 mRNA downstream 50046 16180917 ~ 16199115 (-) True cib2
XM_026919337.2 mRNA downstream 83162 16141596 ~ 16165999 (-) True tbc1d2b
XM_026919995.2 mRNA upstream 259 16251344 ~ 16254496 (-) True LOC113530180
XM_026919070.2 mRNA upstream 5425 16256510 ~ 16262939 (-) True LOC113529693
XM_026919996.2 mRNA upstream 14477 16265562 ~ 16267986 (-) True trpm1b
XM_026919384.2 mRNA upstream 74857 16325942 ~ 16362375 (-) True otud7a
XM_026918976.2 mRNA upstream 192370 16443455 ~ 16458395 (-) False bnip2
XR_004578830.1 other downstream 257067 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1021129 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1161145 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1436456 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2416272 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 502091 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 802281 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1503299 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1955068 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 2053553 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile