RNA id: TU177366


Basic Information

Item Value
RNA id TU177366
length 1939
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G149718
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16422666 ~ 16424604 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAGTGTGTTGTCTTTATTCTTTTAACAAATAGAGAATTAGCACTTACATAATGTCTCtggcaaaatgcaaaaaagaacCTTATtttgaaagagtgaaagagattttgtttataaagcacatttaatacaacaaaagctgaccaaagtgctgtgcatacacaaaataaaatgatatagaataaaatattaagagtacgtttgaaaaaaaagagaaaagaaaacccaccaaataaaacacagatagaacagacaaacacagattAAAAAGCCACCttataaaagtgtgttttgtgtcttgatttaaaaactgtaacaaAGGCTTACTATTAACTGCTTGCtaatatttttctcatttattgcCATGAGATTGagttcacatacacacatttctgaagTTTGTCTGCTTTGTTAAAATCTTTTAACTGTTAAAGCTAGTTTGAAGTATTACTGGCTTTGCTACATTAAAGTTCATGAACTTTGAACATTAGAATATTTCCTTAAATAAActctacatttaaatataaatattagtcatatatacagtgtgtcaAAATATACACAGTTGGTAGAATTATGTAAATacagtattatttaattatatttgctTTATCTATGTTAAGTAAAGACTGACCATAAATTGCTTTGTACCGTAAAAAAGCCTCTAAGCATTTTATAGCAATGTCATCCACTCCTGGGTCAAATTTGTTAGCAAAGAGATGTTTCTGCTTCAAAATCCAGTTCAGGTCCCCTgctccataaacacacactgcatgccTATATGACCCAGTGCATGGTGGATATGGTGCTCCATCCTTCATGTTTCCTTCATGGTAAATCCACTTGACCAACCTCGCAATTGCCACCATGTCCGACTcatcatatttttcattgtGTGGGTTGGAGCCAGGCACTGAATGCATCCTCTGTAGTGTTGCCCACATGTGCTCATCTGGGCTGTACGTGTCCTTCTCCCATTCCATGAAGTTCTGGATTTCCGGACTCTCAAAGATATGTTCTACAAACTCTCTAGTAACAACAAAGTATGCATTCCCAGAGAACATAGGGATGTCAATGGGTGGCGGTGTCTTCCTAATGCCTGTCCGAGTCACAGTGGTTGTGACGTTATGATGGTACTCCCAGCGGGCTTTTTTGTGTGAGCTTGTGACTTCTGACTCCATACTGTTCTTTCCATTGAGATTTTTCAGAGAACGAACAAGCTCTGCATTGGTTTTTAAGGGAAAATCTGCCCCACATGTGTTGAGCAGATACCTCCACCTGACAGGAGACTTGAGAAGGTCCTCCATGCAGTTGATGTCTGCTTGAACTCGTGACCAGGAGGCATAGATGACACCCTCTAACTTACTGGCCACAAACACATTGGGCAAACAAGACACAATAGCCCGTACCGCCTCAAAAAAGATCTTAGGTGACTTCTTGTCCACATGAACACAGTAGACATTCTGAGGAGTGTAAATAGCACGCAGGAGCCTCTCAAACATCTCAATCTTCTCATGGATAACTATGGAGTAAGCAATTGGGAAGTCTCTTTCCTCCTTGCTCAGAGGAACTGTTAGAAACCCTCTATCTCTGACAAAAAATTGGCAGTCCTTTGTGGCATTTATGTAGAAGGActcagaaaaaagagaagtttTTACCCGCTGAGAAAGGAGTTTGCTGAAGTATTTGCTCTCAACTCCATTCATGTCTCCTTGGATAATGGCTGAACAAGCTTGCAGTTCTCCAACATCATGCTTTATCAGGTGTTCCATGTCCACCCGCTCGCTCTGTAAGCAGCCTTTTCTTGTAGAGTTCATTACAAGGTAAATAAGTGAAAAgctaagaaaaaataaagagatatatctcaaaaacagttttttcttaAAAGCCATTTCTTAGGTGAAATTGCTGCATGTATCAGAAGTCAAACTCAGCTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177254 lncRNA downstream 104740 16309890 ~ 16317926 (-) True G149632
TU177277 lncRNA downstream 167180 16254647 ~ 16255486 (-) True G149649
TU177268 lncRNA downstream 171581 16249161 ~ 16251085 (-) True G149643
TU177252 lncRNA downstream 184558 16233429 ~ 16238108 (-) False G149631
XR_004578686.1 lncRNA downstream 190857 16230614 ~ 16231809 (-) True LOC117597941
TU177505 lncRNA upstream 36187 16460791 ~ 16461045 (-) True G149836
TU177511 lncRNA upstream 71567 16496171 ~ 16498461 (-) True G149841
TU177528 lncRNA upstream 188380 16612984 ~ 16614416 (-) True G149854
TU177779 lncRNA upstream 594352 17018956 ~ 17019183 (-) True G150089
TU177718 lncRNA upstream 603513 17028117 ~ 17042478 (-) True G150036
XM_026919384.2 mRNA downstream 60291 16325942 ~ 16362375 (-) True otud7a
XM_026919996.2 mRNA downstream 154680 16265562 ~ 16267986 (-) True trpm1b
XM_026919070.2 mRNA downstream 159727 16256510 ~ 16262939 (-) True LOC113529693
XM_026919995.2 mRNA downstream 168170 16251344 ~ 16254496 (-) True LOC113530180
XM_026918917.2 mRNA downstream 184509 16236143 ~ 16238157 (-) True rps27l
XM_026918976.2 mRNA upstream 18851 16443455 ~ 16458395 (-) False bnip2
XM_026918977.2 mRNA upstream 18851 16443455 ~ 16458395 (-) False bnip2
XM_026918974.2 mRNA upstream 18851 16443455 ~ 16458395 (-) False bnip2
XM_034307284.1 mRNA upstream 18851 16443455 ~ 16458395 (-) True bnip2
XM_026919690.2 mRNA upstream 116248 16540852 ~ 16546270 (-) True anxa2a
XR_004578830.1 other downstream 430572 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1194634 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1334650 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1609961 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2589777 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 328572 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 628762 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1329780 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1781549 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 1880034 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU100220 True 3456 lncRNA 0.38 2 NC_035904.1 16797045 ~ 16801051 (-)