Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU177372 |
| length | 349 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 1 |
| gene id | G149722 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 16439706 ~ 16440054 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578685.1 | lncRNA | upstream | 97743 | 16338590 ~ 16341963 (+) | True | LOC117597940 |
| TU177191 | lncRNA | upstream | 111167 | 16328256 ~ 16328539 (+) | True | G149574 |
| TU177169 | lncRNA | upstream | 184392 | 16254684 ~ 16255314 (+) | True | G149552 |
| TU177011 | lncRNA | upstream | 411687 | 16027607 ~ 16028019 (+) | True | G149428 |
| TU177010 | lncRNA | upstream | 413194 | 16024844 ~ 16026512 (+) | True | G149427 |
| TU177373 | lncRNA | downstream | 5985 | 16446039 ~ 16449140 (+) | True | G149723 |
| XR_004578660.1 | lncRNA | downstream | 20326 | 16460380 ~ 16474228 (+) | True | LOC117597920 |
| TU177389 | lncRNA | downstream | 100545 | 16540599 ~ 16573872 (+) | True | G149729 |
| TU177842 | lncRNA | downstream | 796587 | 17236641 ~ 17236946 (+) | True | G150148 |
| TU177846 | lncRNA | downstream | 813613 | 17253667 ~ 17255337 (+) | True | G150152 |
| XM_026919261.2 | mRNA | upstream | 15318 | 16422623 ~ 16424388 (+) | True | gcnt3 |
| XM_026919260.2 | mRNA | upstream | 18016 | 16400842 ~ 16421690 (+) | True | LOC113529796 |
| XM_026919054.2 | mRNA | upstream | 128647 | 16296593 ~ 16311059 (+) | True | klf13 |
| XM_026919443.2 | mRNA | upstream | 188631 | 16242248 ~ 16251075 (+) | True | rab8b |
| XM_026918914.2 | mRNA | upstream | 204325 | 16231335 ~ 16235381 (+) | True | dnaja |
| XM_026919602.2 | mRNA | downstream | 58470 | 16498524 ~ 16500108 (+) | True | foxb1a |
| XM_026918983.2 | mRNA | downstream | 455656 | 16895710 ~ 17009651 (+) | False | tln2b |
| XM_034307271.1 | mRNA | downstream | 504586 | 16944640 ~ 17011850 (+) | True | tln2b |
| XM_034307272.1 | mRNA | downstream | 504586 | 16944640 ~ 17011850 (+) | False | tln2b |
| XM_034307066.1 | mRNA | downstream | 588023 | 17028077 ~ 17042476 (+) | False | tpm1 |
| trnav-aac_18 | other | upstream | 398459 | 16041175 ~ 16041247 (+) | True | trnav-aac_18 |
| XR_004578669.1 | other | upstream | 617115 | 15807990 ~ 15822591 (+) | False | LOC113529564 |
| XR_004578670.1 | other | upstream | 619550 | 15807990 ~ 15820156 (+) | False | LOC113529564 |
| XR_003403067.2 | other | upstream | 620133 | 15807990 ~ 15819573 (+) | False | LOC113529564 |
| trnar-ucg_5 | other | upstream | 2619044 | 13820590 ~ 13820662 (+) | True | trnar-ucg_5 |
| TU178368 | other | downstream | 1394183 | 17834237 ~ 17842535 (+) | True | G150589 |
| TU178369 | other | downstream | 1394183 | 17834237 ~ 17842535 (+) | False | G150589 |
| TU178370 | other | downstream | 1394183 | 17834237 ~ 17842535 (+) | False | G150589 |
| XR_004578809.1 | other | downstream | 2234956 | 18675010 ~ 18683428 (+) | False | rfwd3 |
| TU178953 | other | downstream | 2281541 | 18721595 ~ 18724686 (+) | True | urahb |
