RNA id: TU177373


Basic Information

Item Value
RNA id TU177373
length 3079
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G149723
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16446039 ~ 16449140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCATCCCCTTTAAGACAGAATTTACTTCTGTAGCTGTACATACCATTCAGTCTACACTTTACATGAGGTCAGCATCCAAATCTGTATCTTTTGTTCAGAGAAAAGATGGGCAAGgtgattatatatatgtatatatatatttgcaggggaaatgaaacaaataaagatCGATATATTGGCATCACTCTTCCTTAAACTGTCCGCACTGTAAACATTAGAGGCCCCTCTAAGGAATTCTGTGACACTGGTTTCCACGATTCAGTGAATTTAAATGAGAATCTATCAGTAgttcagcttaaaaaaaaaagcataaacataaaaaacaaaatctgtGAATCATCCATCACAAACGAACATGCAGTGACTGGACATGACAGCCAGCAGTTTTTCATCCAGCAACAAACGTCACATGCGTGGTTATTTTTAGTAATGTTCCTCAAAACAGTAAGGGTTAGTTTGTGCATTGCAGGTAATTGCTATGGAGACCTGGCAAAAGCCCTAGGGTGAATTATACAGATACCTTTTACgtgttttcctatttttttcttcatcaaaCCTTAGAAGAAGGGCAGGGAGAAGGGTTAAGGTACAAGAGAGTTTCTGAAGGTTTAAACAGCCAACAGCAGACAATCATACACTCTACTGTCAAAAAGAGACGTGCTTTAAGCTCTTGGATGCAGACAGAATTCTTGTTATTAAAGAGATGTAAAAATGATGAaggaattcaacagtgttggcagacatttaatgaataaaatgcctTTCAATTTTTGGTTACTTTTTCCTACATGAAAAATTTACCACACCACAGAGGAAGAATTGTGCCCACTGTGTTCATGCCTAAGGCAATATTATATTAAAGGGTTTTCACTCTATACTTTCCCTCGCTTGCATGTTACATGACTTTTAATTATGCTTGTCAACAATTATATGCCCATATGCCATAAGATTCTTTCATTCCTCAGAAAACTGGCATAACCAATATGTTGTACTTGAATAGGGCAACTGGGTTTGCCTGACAGTGTAATCCAAAATTCTTGATCATTAAACATGAGCTCTTCATCATTCATGTGCATCATGTGCATACCAAGTCTTAAattctatttcacccctcctaTTACCAGGGCAGATAATATCACCTGGATTGTGTTAGCTGGATTCCAGAAACATGTATAAAGGGGCCAGAGTTGGGTCTCCCACCTCTTCCCTTATCTCTGATTGAGGCCTTACTCAAGGCTTTGGCTCAGTCCCTGCAATCTACCTACTAGCAGGCTTGTGGCTAAGCATGGCTAACATGGTCAAGTGGCTCTCACTTACTGTACTACTGCTCACTGTTTAACCTGCTGAAATAGTCAGGCCACTAACACACAAAAGTGGGTCTGGAATAGGGTCTCCCTGAGCATGCCCTCATTCTTCCCACTGGGGTACAGTCCTCTCTCACCATCTCTGCTCAAAATTTTCAACATGCCCCTCTGCTAAGTGCAGCTAGCGTGTTGAGGTGCTACTCATAGCTAGCCTACTGCGTTAGCCATGttgatataaaaacacatcaggattGGAGTCAGGTTCCCTCCAATAAAACCGCATTCTCTTCACCGGGCCGTTTTTCCCTCTTGGCAATTCCTTGCCCAGCCTCCACATACCTCCCCTGTAATCCGAGGTCAAACACATTGTACTCATTGCCTCAGCTTTGACCACCTTAAGGAAGCGGTCTCTGGTTCAGGCATCCCCTGCTCTGGACTGCAACCTTTACAGCTAGTTATACTGTTTCAATGACATGCATTCCAACTGAAAGTCTTCCTTTTGTCCTCTCTCTAACGTCACAAGCGTTCTTAAGATATATGCAGGCGGCCCTGTTGCCTCTGATGGACAGAGGCATCAGGATTCTCCTGTATTTGGCTCTTATGTGCCTCCACCATCGTTTAGACAATCCATCTATATACATTACGGTGCTTGGCCTCAAACACTCTGTAAAACTATTGTCATTTGGAATGCTAGCCACCCTGGCATTCCAACATGTGGCCGACATTATCACACTTGCAGAATGAATCCAGTAAGGCTGCTATGTGTGGTACAGGCTCTTTTTGAGTACAGTAGGTTTGCAGACTTCTCTTAGTCCCGTAAATCATTCCCCTGTGTCTGTTGGAAAAAGGGATCTTCCAAAAGTGGGTTATCAGCATGTGGCTGATTACAATTTCAACCAccacaggcagacacacacccTCATCCCAGCAAGAGGGGCATGAGCTGTACCTTGCTAGAGTCTTGTGGCTTATCTCATGGAAGGGTTCTTCTTGGGATCAGGGGCCCATTGGAAAGAGATCCTTTAACAGCTGGGGAAAATGTGGGGCCCACAGTGGCACAGGTTTGAGTGTGAGAGAACACCACATCAACAAGCTAGAACTGAGCGCAGTCTACGGGCTGGGCATGCCACCCTATAAGTAATGTATGCTTATATGTTAACAAGGTTAACATTGGGTCTCACAGGGAACTGACTGTGGAGGTCATCTCCTGAACAACCTTCCAGTCAGTCCTAAAGTGGGTGTGTTCCTCATGACATGGTCATTCAGAACCAGCACCAATCTTGTGGGAACTTGGCAAGAAGTTTCCAGGGAAAGATATGACAACGGTATTTATAGCAAATACTACAAAGTACGCAAGACTACGTAGTCTTGCttactttatgtagtcttgcataCTGTTGTGTTGCATACtgttgtgttgcaccatggtcctggagaaacaacattttgttccaatgtatacaagctgtatagaggaatgacaataaaaacccacttgaacACTTGATACAGGCACTTTCTGACTTTGTAGCAACCTCTTGGTATGTATGCACATACGGACAAGAACTGTTCATTCATCCAGGTTATATTCAAATGCATATCAATGTCCCTCTAACTACAAGAATCACTAAATTAATTcctaaaaaaaggaaaacagctCTTATGAAATTCACTTACTGCTTGATGCATTCTGGTATTGACACATATTCCATTGGCACAAGCTCAGCAAGGTCTGCCAGACTGTACACATACTTTATTTTTTGGCTAAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177372 lncRNA upstream 5985 16439706 ~ 16440054 (+) True G149722
XR_004578685.1 lncRNA upstream 104076 16338590 ~ 16341963 (+) True LOC117597940
TU177191 lncRNA upstream 117500 16328256 ~ 16328539 (+) True G149574
TU177169 lncRNA upstream 190725 16254684 ~ 16255314 (+) True G149552
TU177011 lncRNA upstream 418020 16027607 ~ 16028019 (+) True G149428
XR_004578660.1 lncRNA downstream 11240 16460380 ~ 16474228 (+) True LOC117597920
TU177389 lncRNA downstream 91459 16540599 ~ 16573872 (+) True G149729
TU177842 lncRNA downstream 787501 17236641 ~ 17236946 (+) True G150148
TU177846 lncRNA downstream 804527 17253667 ~ 17255337 (+) True G150152
TU178004 lncRNA downstream 981003 17430143 ~ 17434377 (+) True G150261
XM_026919261.2 mRNA upstream 21651 16422623 ~ 16424388 (+) True gcnt3
XM_026919260.2 mRNA upstream 24349 16400842 ~ 16421690 (+) True LOC113529796
XM_026919054.2 mRNA upstream 134980 16296593 ~ 16311059 (+) True klf13
XM_026919443.2 mRNA upstream 194964 16242248 ~ 16251075 (+) True rab8b
XM_026918914.2 mRNA upstream 210658 16231335 ~ 16235381 (+) True dnaja
XM_026919602.2 mRNA downstream 49384 16498524 ~ 16500108 (+) True foxb1a
XM_026918983.2 mRNA downstream 446570 16895710 ~ 17009651 (+) False tln2b
XM_034307271.1 mRNA downstream 495500 16944640 ~ 17011850 (+) True tln2b
XM_034307272.1 mRNA downstream 495500 16944640 ~ 17011850 (+) False tln2b
XM_034307066.1 mRNA downstream 578937 17028077 ~ 17042476 (+) False tpm1
trnav-aac_18 other upstream 404792 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 623448 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 625883 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 626466 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2625377 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1385097 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1385097 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1385097 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2225870 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2272455 18721595 ~ 18724686 (+) True urahb

Expression Profile