RNA id: TU177389


Basic Information

Item Value
RNA id TU177389
length 5140
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G149729
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16540599 ~ 16573872 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAAAATGTGTCAATAATATTGGAGATCAAATACTTTTggactatttatttaaaaaaagttgctCCAAACAGCATAATGAAGCTTCAGCAGGCAGCAGATGGTTGGCATGAGGCTTAGAAGCAAAGCCCTGTGATGCTCTATTGCTCTCTAGTGGTGAAGTACACAAACTGCACTCCTTCTCCAAGAGCTTCAGGTCAGGATCTAAATACAGCAGTTACGTACCATAGAAAtacatacaaatgtttttttgttttttttttgttcacgaAAGTAACTTACCTAGCACCACACGTCAGtttaacacaaaattaaatgtcagCACGCCCTACCGCTATCAAACTAACTCTAAAAGAGAGAAGTATACTAAAAACAGAGATACTGTACAGCATGATGTAtccaataaacagataaatatttGCACTGAGTAGGTCTTAatagcagtatttttttttttttttttttacctatacAGACAGATGTTACAAAGTTACTTTTATACATGTGAtcaataataacattaaatatagtgaattaaaagcgGAAAGctgagggggagagagaaagagagggaaatcAAGCTGTACAGTTTACAGGCCATATGAAGTTCTTAGTTCTCCACCTGGGAACAGAACTAGTcaaatatacaaacaaaacaaaacaaaaaaataatcagagagagcgagagagagagagagagagagaaaagaaacaacaaaacatgaTAAATAAGAGGTGTATTTACATGCAGGTGTCCAAAGCCTATGCACaaagatgaataataataataataataataataataataccatatATATTATTGCTTGACATTCGATTATGgctaaagtttttttgtttgtcttttttttgtcttttgctctATATTCTAAAACATATCTCACTTTATTAGCTGTGCTTTCGGGATAAAAggtcacattttaaaaaaaatgcaatgaaaaTGATTGGTAATCTCTACATCTTAATAACACTTTCACCTTCAAATCAAAATGGCGTCACAAGCATGACATCACACATTAATTCCACGTATTAGAACATgttgaatattattaaaatggCTTCTGGCAGTCTAGGTGTCGTCACTAAGAAAGAATGACGGAGTTATTACGATGGAACAGTGTAAACTCGTTCTGTGGTATTTGTGACTGCATAGGCCCGTCAGTGGCAGATTTGCATAATGTAGGTGTGAaggattttaataaaataatggcgTGCACTGTGTCATGCTTGTCCAGCCTAATGGATGAGTTCAAACTTGCTACTAAAAGTGTGTAAAACCTGGGAAAACTAAGATATCCATATACCATTTACTTCACCAGCTGACCCTGCTGCTCCTTATCTACTTTATTAAAGCCTTGTCTGGGGTTTGacttacacaccacacacactatacacaccactcacagacacacactcatattgCTTCTTACAAAATTAACAAAGAGGGTAGAAAGATCTCAAGAgactgtttcacacacacaatacaacacacaatatGGAAACTTCTGATGCGCAACTCTTTCACAAGTGAGAGTATTTATATGTACATCGACACGTCAATACCACAGATCCAGAGATGGTTCAGTACTTTtgattgaaaaaataaatttgtccaAAGTTTCTACTTTACAGCCTGTATTGCTTTTAATACCTAAAACAAACTACACTGACAAAAAAAtcagtacagtttttttttatggtgcAAACGGGTATCGTTGTAATTAGCATTAACTAGGACACCACGATATGGATCAAGTAGACTGAAAAGAACAGAATTACAACAGTCTTCTGTGTATCAAAGCTTGTTCAGAGGGAACTCCACAGCAGTGGCTACCCTGTCGAAACCCGTATTAGTAACACACTACGCACTCCTGGCTCATGGGCAGAGTCTGCTAGCGGAGCTAATTGTACAAGAGGTATTTGGCACATAGATTCATACAATATGTGTGAAAGTTACACTAAAAGGGGTGACATTATAGCTCATTGCTTGTTTTTGTATGATGTTGGACCCTGTTGGTAGCATAATGTGAGTGCACTGAACCGTATTGATCTGTTGTTTTAGGCATTTCTGAGACCTGATGAGATGTGTAGGATTTGTTACAGGTGCACAAAGTGAACATGAGATGATGACTCTTACTAACCAGAGAAgtacttctttttaaaaaaaacgacAGAAAATGTTATGTTGCTACGTTACAGAAATGGTCTGCCCCAGTACTTTTAGTAAAATGTTCTCCCTGAGCATTTGGTATTTAAGTCCACGCACTGCCAATTTCAAATGTTCCGCTGGATTGTCATTCACAGATTTGATGAAAGTTTCTGTGTAATTTCAAAGTCGCTGGCCAAGAACAATCAAATAAATACACTGCAGATGCACTGAGTCAAAGTTACATGATTACTGAAACACATTCTCTATGGTAATAAATGTCAGATCTAATTTTAGTGTGTTATACTGTAATTGCATTTAATGAGCCATGCTGACCCTGTTAACATAACTATGGTATATATTGAGAATGTAGGTACAGGAAATAATGGAGGGCAGGACCAATCATCTCATAAAAATCAATGTTAACTGAGTCAAACAGAGTTAGAAGTACAACTCTTCCCTGAGGAAAATACATAGTATATTGTGTAAGGAGCATGATGAGAAGGTGGGGGGGAATAGAAGTGCCTACAGAATTACTAACAACTAGCAGAAATGGTTGTTCATGGGATATCAGCGTGGTGTTTCTGTATCATGTGTGCATTTTATAATAGTCACATTATAATTTCACTGGAATGTTCTGTGGACTCAACATTAGGAGAAACTGCTATGGCACGCTTGAAGGGCTTAGACTCAACAATTAGACACAACAATTACGcattcaggggaaaaaaaaagcactaacaCTACTATTCTTTCTGACTAAAAGACACAAAAATCGAATTATTGCAGGAATAAGTGCTTTATaatctcactttctttctctccctctccttctttcATCAGCTTATGCATTGTACATATTAGAAAAATAGAAGTTTTACTACCAGACAAGGCTTTGAATATTTTTCTGATTCTTTAACTGTCTCCTTATTACCGGTACAGCTGGGCAAAGGCTGTTACAGAGAGGCTGTTTGAGAACGAAAGCCTCGCTCAAACTCAAATCTCTGTTCTACAAAAGCAGATGGGGCAGAATTAACCAGGGAAGTCTGCACGCTgtatcattaataaatgaatgctcAAGCCATATGTGAAATACTGAGAGATGCTGTGGGATCTTCACCACTAGATGGAACCATTGACTAGCTCCTAACATGCACTGCACAATGAAAATTTATTACTCTAAACCCCAGCGCCTGCTTTCCACACACTTTAATGGCAATGATTTAACTATTGTGCTTTACGTTTGTGCTGAAAATGGGCATTACACCTAAGAGAAAATCAAGCTTGCTAACAAGTCATACGGTTACACCGGTTTTAGACAAGGTGAGACGTGGATTGGCAGTGTTGTAGAACatgctgatctgggatcaggTTCAGCCTTGCACACACTTCTCATTCTGTAAAGCGCTAAAACTGATCTGAGCCGAAAACCCCGATGCAACTCTATACACCTCTCTGTCAGCCTTTACCCAGCATTGATCTTATCCTTACACACTtgctcgctcacacacacacacacacatctgtaggAGCTTCCAACATGTAGCCTCTGTGAGTCGGTGGTTTTTCGCTTGTATTTCTGTTTGCACATGCAACACATCACTAGGTAAATATACAAGTCTTAAATTAAAGAAAGGTGCAAATAAAAGTGCCTTATCAATTTTGACAATTAAGAATAGTCTAGCTACTAATATTAtacatgttatttaaaatagattctataaacattacttttcttttctgtatagTAAGTACTTATGACCGTATACCCTGTAGCACATTAGAAAACAGGTGGAATGGACCCTTGCGTTGTGGCGGTGTGCTCAGTTAAACTGCCATAATCTGTCCAGAAAAAGGATTTAATAGCAGATGGCCTTATATGATCTCACTAAGCAACCACGGTGGATGAAGTGCTCGACAGCTAAAagtaattgcattttttttaaaaactagaaTTACCAGAATTCtacttattttttcttctttcttctcttttttttaacgaTTGTCCTTAGAAAGGCGTCAGTTTCGTGTCACCCCATGCAGACGGCTCCGTTCCACGTGCCccatgctttctctttctcgccttctctctccctttcacCGTCTCTCTCCTCATCTGGCTCTCCTCTTTTGACCTCTTTTATTGCTGGTTTACATTCTGAGCAGCAGCTTCCCagcaaaagacagaaagagtaGAGAGGGGCCTAACCTAGCACATGCCTACTATTACACGGAGGGTGTAATAAGTAATGACTCACTGATTtcttataattataatcattgtttaaaaaaattagatcCAAATTAATGGCTGCGTTCTTTGAAGAATTTAAAGGTTTGATACAATAGGACGGAAACACCATTTCTGGTGATCATTTAGAAATTATCGAGGGACCATTCTGGAATCGTATGCATGAGTGCTTCAGGTTGAgccaggaaaagagagagagagagagagagagagagaaagagagagagagagagagagagagaaaacaagcatCTTCATCTCCTCATCCTTTCCCCTGGGCCTTCCCAATCCCACTTGTGTCAAAAAAGGAGGGGATAAACCTCACAAAATCAACCCTCCAAATAAAAGTCATCTTGCTGTACCCCCCTCCcgaaggaaaacaacaacaacaaccacaaaaaaaaagaaagtgtgtgcaGCAGGTTAGCTgtcctgttttgtgtttgtgtatgtgtttgtgtatgtgtgtatgtgcagggCACTGGTAAAGTGTCTCAGATTCATGCTCGACATTCCCCACGGCGTTTGTGGCCCCTCAGAGCGGGGCGGACGAAGGGGCTGCTACCCGTCCACAGGCATGGACTGCTCAAAGTCTGATCCAAAGAGCTCCTTGTATAAGGGCGGGAAGTGGGTACGCACAATGTCCGGGTATATTGCTTTGAAAGCGGTCAGCTTCTCTGTATGCCTGCTGCACAGCGCTCGCAGGGTTGACACTTTGCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578660.1 lncRNA upstream 66371 16460380 ~ 16474228 (+) True LOC117597920
TU177373 lncRNA upstream 91459 16446039 ~ 16449140 (+) True G149723
TU177372 lncRNA upstream 100545 16439706 ~ 16440054 (+) True G149722
XR_004578685.1 lncRNA upstream 198636 16338590 ~ 16341963 (+) True LOC117597940
TU177191 lncRNA upstream 212060 16328256 ~ 16328539 (+) True G149574
TU177842 lncRNA downstream 662769 17236641 ~ 17236946 (+) True G150148
TU177846 lncRNA downstream 679795 17253667 ~ 17255337 (+) True G150152
TU178004 lncRNA downstream 856271 17430143 ~ 17434377 (+) True G150261
TU178009 lncRNA downstream 872377 17446249 ~ 17446460 (+) True G150265
TU178012 lncRNA downstream 883048 17456920 ~ 17457135 (+) True G150268
XM_026919602.2 mRNA upstream 40491 16498524 ~ 16500108 (+) True foxb1a
XM_026919261.2 mRNA upstream 116211 16422623 ~ 16424388 (+) True gcnt3
XM_026919260.2 mRNA upstream 118909 16400842 ~ 16421690 (+) True LOC113529796
XM_026919054.2 mRNA upstream 229540 16296593 ~ 16311059 (+) True klf13
XM_026919443.2 mRNA upstream 289524 16242248 ~ 16251075 (+) True rab8b
XM_026918983.2 mRNA downstream 321838 16895710 ~ 17009651 (+) False tln2b
XM_034307271.1 mRNA downstream 370768 16944640 ~ 17011850 (+) True tln2b
XM_034307272.1 mRNA downstream 370768 16944640 ~ 17011850 (+) False tln2b
XM_034307066.1 mRNA downstream 454205 17028077 ~ 17042476 (+) False tpm1
XM_034307065.1 mRNA downstream 454209 17028081 ~ 17042473 (+) False tpm1
trnav-aac_18 other upstream 499352 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 718008 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 720443 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 721026 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 2719937 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 1260365 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 1260365 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 1260365 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 2101138 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 2147723 18721595 ~ 18724686 (+) True urahb

Expression Profile