RNA id: TU177505


Basic Information

Item Value
RNA id TU177505
length 255
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G149836
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16460791 ~ 16461045 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATGATGATCATGAGAGATTGGCGATTTTGTCTACTTTTTCCAACTTCAATATACAAACTTTCCACTTTTCCAAAATGTTAGACCTTCCACTAGTAAACGAGTTAcagaactgaatctgaaataTCCTGGCTTTGGCATAATACAAGCAGACTTAAAAGAATAATCCACATAAAATTGTAGACCGAGACACATGATGGAAAGTCGCTATGGATGATGGCGCAATCCATCTCAAAATATCTTATCAAAGTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177366 lncRNA downstream 36187 16422666 ~ 16424604 (-) True G149718
TU177254 lncRNA downstream 142865 16309890 ~ 16317926 (-) True G149632
TU177277 lncRNA downstream 205305 16254647 ~ 16255486 (-) True G149649
TU177268 lncRNA downstream 209706 16249161 ~ 16251085 (-) True G149643
TU177252 lncRNA downstream 222683 16233429 ~ 16238108 (-) False G149631
TU177511 lncRNA upstream 35126 16496171 ~ 16498461 (-) True G149841
TU177528 lncRNA upstream 151939 16612984 ~ 16614416 (-) True G149854
TU177779 lncRNA upstream 557911 17018956 ~ 17019183 (-) True G150089
TU177718 lncRNA upstream 567072 17028117 ~ 17042478 (-) True G150036
TU177721 lncRNA upstream 567072 17028117 ~ 17052512 (-) False G150036
XM_026918976.2 mRNA downstream 2396 16443455 ~ 16458395 (-) False bnip2
XM_026918977.2 mRNA downstream 2396 16443455 ~ 16458395 (-) False bnip2
XM_026918974.2 mRNA downstream 2396 16443455 ~ 16458395 (-) False bnip2
XM_034307284.1 mRNA downstream 2396 16443455 ~ 16458395 (-) True bnip2
XM_026919384.2 mRNA downstream 98416 16325942 ~ 16362375 (-) True otud7a
XM_026919690.2 mRNA upstream 79807 16540852 ~ 16546270 (-) True anxa2a
XM_026919801.2 mRNA upstream 86280 16547325 ~ 16566002 (-) True ice2
XM_034307590.1 mRNA upstream 86280 16547325 ~ 16562803 (-) False ice2
XM_034307591.1 mRNA upstream 86280 16547325 ~ 16562788 (-) False ice2
XM_026918892.2 mRNA upstream 106250 16567295 ~ 16800368 (-) True roraa
XR_004578830.1 other downstream 468697 15990080 ~ 15992094 (-) False islr2
XR_004578773.1 other downstream 1232759 15220972 ~ 15228032 (-) False LOC113529695
TU176301 other downstream 1372775 15086123 ~ 15088016 (-) False dynlrb2
TU176092 other downstream 1648086 14810004 ~ 14812705 (-) True G148647
TU175596 other downstream 2627902 13825897 ~ 13832889 (-) False LOC113529512
XR_003403120.2 other upstream 292131 16753176 ~ 16753281 (-) True LOC113530224
TU177725 other upstream 592321 17053366 ~ 17058906 (-) True LOC113529460
XR_003403060.1 other upstream 1293339 17754384 ~ 17760039 (-) True LOC113529452
XR_003403059.2 other upstream 1745108 18206153 ~ 18214487 (-) False fnbp4
XR_003403119.2 other upstream 1843593 18304638 ~ 18304801 (-) True LOC113530223

Expression Profile