RNA id: TU178004


Basic Information

Item Value
RNA id TU178004
length 1597
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G150261
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17430143 ~ 17434377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACCTCAGGCAGTCTTCTTTAGAGGGTCTGTCCAGGTCTTTCTGCAGCTGTGGGTCGAGAGGCTGCATGGGTGTGTTGGGGGCACTGGGTCTGCTTTCTTCCCTGTGTGGTCTTAGCACTGATACTTGTGAACTTTCTGGAATCCTTTTCTCATCACATGACTTCTCGGCTGtatccctgtctgtctcactacTCTGAGATCCTactttcatttttgttcttACTTCATTTACAATCTGATCCAAATCCTCGCCTGTGTCCACTGATTGGTCCCTATCCCTCCCGGTCTTTGCTCTATAGCTATGAAGACACCCCTGTCCCCTGCCTATACTGTCTTCAGGACTGTCACTCCCCATATGTAAACActtgtcttctcttttttctcttccatgATCTCTGTATGAATGTCTCTTTTTAAAATCGTCTCTATTCTCAGTATCTTCAGGTTTGGTCATACCATTAAGTCTACAGTTTCTGCTGCCTCTGTCCTCCTTACAAATCTGATGCCCTCTGAATATAGACCCTAGTTTTGAGTTTTTATCTGCCCTGCCCACTTCACAGTTTCCTGAATCATCAACTTTAACTTCAGCATTGCTCTTTTTATTGCCTTCCCTGTGACCAATAAATGAACTCTGGGTATCACCCTTACACTTTCTGGGATGCTTTTATCCATTCCGTAATCTTTACTTAAATCTTCTTCTCCTCTACTCATTCCTTTACTGTAATTTGATCCCTGATGATGGTTTTTACTGTCGACTCGTAAATCACACTGTCCTTTGCAGATAATTCCATCCTGACTCCCTACTGCCTTCTCTTGTTCATAAGCAAAATAGGTTTCATCTTCCTCCAcagcatcatcatcaacatcatcatcatcatctagtTCCTCTgcatcttcttcatcatcttcttcatcctcaGCCATGGGAGCCTGAATGAAAGTAGACTTGGTTATAGGCTCGGGACATTTGTGGACCAGCTCCTCTGTACCTTGCTGGAGTACTTCATAAAACCCTTCACAGAATTCCCAGGCACCTCCTGGATTTCCTCCAGCATCTGGTTCTCTGGAAGTACTTGGTCTATCACTGCTTTCAGCACCCTCGTGACAGTCCATTCCTTCCAAATAGCTCTCATCTTCAGGGCAACAGTGAACATAGTAAGTCATCCCATCTGCATCAGTATGCAgttcctcatcttcctcataGTCctgctcttcttcctcctctgatCCCACATTATCATATTCAGACACTGAGTCTTCCTCCATGCTGTCACGATGAATAGGACTATCTCCATGGTCGAAATCTTCCCCTGAGACAGAGCCATCAGTGGGACCGAAGCTGGCTGGGATTGGTGTGCTTGACTGGCTTTCTGTGTTACTGCTATGAGGTTCATCAGGATCCACTCTGGCTCTGGAGTGTTTAACTGTCTGCTCTGGTAGAGATGAGATGTACTGTGGATGATCAGGCACTGCCCTGGAACCCTGGCTTTGTCTAAGAGCCATAACTGACTTCAGTAAGCCCACGCAAGTGGGATTCCTATGGTGCTTACTGCATTCAGTACGCACAGCTCGGGCAGCCATCCCGTTTCAATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177846 lncRNA upstream 174806 17253667 ~ 17255337 (+) True G150152
TU177842 lncRNA upstream 193197 17236641 ~ 17236946 (+) True G150148
TU177389 lncRNA upstream 856271 16540599 ~ 16573872 (+) True G149729
XR_004578660.1 lncRNA upstream 955915 16460380 ~ 16474228 (+) True LOC117597920
TU177373 lncRNA upstream 981003 16446039 ~ 16449140 (+) True G149723
TU178009 lncRNA downstream 11872 17446249 ~ 17446460 (+) True G150265
TU178012 lncRNA downstream 22543 17456920 ~ 17457135 (+) True G150268
TU178163 lncRNA downstream 268177 17702554 ~ 17702758 (+) True G150407
TU178372 lncRNA downstream 398389 17832766 ~ 17840449 (+) True G150590
TU178374 lncRNA downstream 477260 17911637 ~ 17912583 (+) True G150592
XM_026919689.2 mRNA upstream 6678 17420208 ~ 17423465 (+) True duox2
XM_034307110.1 mRNA upstream 107285 17316673 ~ 17322858 (+) False zgc:101540
XM_026919770.2 mRNA upstream 107285 17316675 ~ 17322858 (+) True zgc:101540
XM_026919717.2 mRNA upstream 114901 17298741 ~ 17315242 (+) True cep152
XM_026919718.2 mRNA upstream 114901 17298741 ~ 17315242 (+) False cep152
XM_026919955.2 mRNA downstream 2857 17437234 ~ 17443674 (+) True eif3ja
XM_026919921.2 mRNA downstream 10984 17445361 ~ 17447657 (+) True si:ch73-330k17.3
XM_026920042.2 mRNA downstream 25113 17459490 ~ 17467526 (+) False scamp5a
XM_026920041.2 mRNA downstream 25115 17459492 ~ 17467526 (+) True scamp5a
XM_034307392.1 mRNA downstream 25860 17460237 ~ 17467526 (+) False scamp5a
trnav-aac_18 other upstream 1388896 16041175 ~ 16041247 (+) True trnav-aac_18
XR_004578669.1 other upstream 1607552 15807990 ~ 15822591 (+) False LOC113529564
XR_004578670.1 other upstream 1609987 15807990 ~ 15820156 (+) False LOC113529564
XR_003403067.2 other upstream 1610570 15807990 ~ 15819573 (+) False LOC113529564
trnar-ucg_5 other upstream 3609481 13820590 ~ 13820662 (+) True trnar-ucg_5
TU178368 other downstream 399860 17834237 ~ 17842535 (+) True G150589
TU178369 other downstream 399860 17834237 ~ 17842535 (+) False G150589
TU178370 other downstream 399860 17834237 ~ 17842535 (+) False G150589
XR_004578809.1 other downstream 1240633 18675010 ~ 18683428 (+) False rfwd3
TU178953 other downstream 1287218 18721595 ~ 18724686 (+) True urahb

Expression Profile